Tpal012359.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Thrips palmi
Gene Symbol
-
Assembly
GCA_012932325.1
Location
NW:9274730-9328330[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 6.1e-05 0.0019 18.2 1.7 1 23 24 46 24 46 0.99
2 22 0.0012 0.04 14.1 2.0 2 23 54 75 53 75 0.98
3 22 6.7e-06 0.00021 21.2 6.3 1 23 81 103 81 103 0.99
4 22 1.6e-05 0.0005 20.0 0.3 1 23 109 131 109 131 0.98
5 22 0.0035 0.11 12.7 0.5 1 23 140 163 140 163 0.97
6 22 0.00041 0.013 15.6 1.9 1 23 169 192 169 192 0.96
7 22 1.3e-05 0.0004 20.3 0.9 1 23 198 220 198 220 0.98
8 22 0.0007 0.022 14.9 1.1 1 23 226 248 226 248 0.98
9 22 2.6e-06 8.1e-05 22.5 1.2 1 23 254 276 254 276 0.98
10 22 0.00035 0.011 15.8 2.1 1 23 285 307 285 307 0.98
11 22 2e-06 6.4e-05 22.9 1.1 1 23 313 335 313 335 0.99
12 22 2.7e-06 8.6e-05 22.5 2.8 1 23 341 363 341 363 0.98
13 22 1.8e-05 0.00056 19.9 3.2 1 23 369 392 369 392 0.97
14 22 0.0072 0.23 11.7 2.4 1 23 398 421 398 421 0.95
15 22 3.2e-07 1e-05 25.4 1.0 1 23 427 449 427 449 0.98
16 22 0.00026 0.0082 16.2 5.5 1 23 455 477 455 477 0.98
17 22 4.4e-06 0.00014 21.8 4.5 1 23 483 505 483 505 0.99
18 22 0.0059 0.19 11.9 3.1 1 23 511 533 511 533 0.98
19 22 2.4e-06 7.7e-05 22.6 6.0 1 23 539 561 539 561 0.99
20 22 1.6e-06 5.1e-05 23.2 3.5 1 23 567 589 567 589 0.99
21 22 0.00051 0.016 15.3 0.6 1 23 595 617 595 617 0.98
22 22 0.00013 0.0042 17.1 0.9 2 23 624 645 623 645 0.97

Sequence Information

Coding Sequence
ATGGGTGTCACGGACCTGGGCGAAGACAAGAGAGAATGCGATGAGAGTACAACTGAGTCAGGGGGGCAGTACAAGTGCACAGAATGTAGAAGGACGTTTTCGGAGGAGACGAAGCTAATGGAACATCTTCAAACCCACATATCAGCTGAAAATGCCTCCCAATGTCCAATTTGCTGTAAAACGTTTAAAGTTGAAAGCTATGTCAAAATTCACCTTCGAACCCACTCAGGGGAAAGGCCCTATCAGTGCCCAATTTGCAATAAGAAATATTACCAACATTGTAATCTACAGACTCATATTAGGACTCACACCGGAGAGAAGCCGTTTGAGTGCCCAATTTGTCTGAAAAGGTTTACCAGAGGCGGAACGCTCAGGAATCATCTTCGTGCTCACACAGGTGAGACCCCTGTGATGaatttcgagtgcacagtttgtaACAGAAAGTTTGCAGACGGGCCGAGGCTCAAAGAGCACGTTAAAAAGCAGCATGCCAGTGAAAAGTCTTTCGAATGCTCTGTTTGTCACAAGAAGTTTGCGGACAAAAATTATGTTGAAACTCATTATCTCAGAGCACATACTGGCGAGAGGCCTTTCGAGTGCGGTGTTTGCCATAAAACATTTAAATTAAGAGGGGATCTTTCAGTTCATTTACGAATCCATACAGAAGAGAAAAGTtttgagtgcacagtttgcaacaagaagttttTGCTTCGTTCGTCTTTGCAGTCTCATCTTCAAATTCATACAGGGAACAAACCTTTTGAGTGCACATTGTGTGATTTAAAGTTTTATAGAGCATATGATCTTAAGAAACATCTTAGAATCCATACTGGACAGAAACCAGAGGGGCGTCACGAatgcacagtttgcaacaagaaatTTGTCGGTAAAACATACTTGGATGCTCACTCACGAACCCACACTGGTGAAAAACCCTTCGAGTGCTCAGTGTGTAATCAGAAGTTTATAAGAAGGGACTATCTCAATATCCACCTTCGAACGCACACAGGGGAGAGGCCTTACAAATGCACAGTTTGTGACAAGACATTCAGTCATAGTGTCTCTCTGAGAGTTCACTCCAGATTGCACACTGGAGAGAAGCCCTTTGAGTGCTCGGTATGCAGTAAAACGTTTAGACAGAAACCAAATCTACGAAGTCACTTCAAAAAATATCATACAGGCAAGATAATGTTCGACTGCTCTAACTGCGACATGAAATTTTTCACCGAAACAAAGCTACGGCAACATACTATTAAAACGCATCGAggagagaagcctttcgagtgtaCAGATTGCGACAAAAAATTTAGGACTAGTTCTGGTCTTAAGATCCATGTCAGTACACACACTGGTGAGAAGAGTCatgagtgcacagtttgcaaaaAGACATTTAGACTCAAATTTTCTCTGAAAATTCACTTTAGGACGCATACTGGGGAGAAGCCATATGAGTGCTCAGtatgcaacaagaagttcaggCAATGTACAGACCTCAAAACTCATCAACGAATTCATACAAATGAAAAGCCCTATGATTGCACCTTTTGCAGTAAGAAGTTTCGTTTAAAAAGGTTCCTGGATATACATCTTCGAAGTCACACAGGGGAAAAACCTTACAAGTGTACATTTTGCAATAAAAGATGTTCTCAATCATCTGATTTAAAAACACACATTCGAACTCATACTGGGGAGAAGCCCTATGAGTGCTCAATCTGCTCTAAGAAGTTTACCCAAAGAGCTCACCTAACAACCCATCTTAAAATGCATAAAGGAGAAAAGCTGTTTGAGTGCACTGTTTGCAATAAGAAGTTTTTGGACGGCTCAGGTCTCAGATCTCATCTTCGCTCCCATACTGGGGAGAGGTCTTTGAAGTGCACCGTTTGTGCGAAGAGATATGTTAATAGTCGAAGCCTAAAAGAACATCTTCAAACTCATGAAGAATGCCAAGGAGCGTAA
Protein Sequence
MGVTDLGEDKRECDESTTESGGQYKCTECRRTFSEETKLMEHLQTHISAENASQCPICCKTFKVESYVKIHLRTHSGERPYQCPICNKKYYQHCNLQTHIRTHTGEKPFECPICLKRFTRGGTLRNHLRAHTGETPVMNFECTVCNRKFADGPRLKEHVKKQHASEKSFECSVCHKKFADKNYVETHYLRAHTGERPFECGVCHKTFKLRGDLSVHLRIHTEEKSFECTVCNKKFLLRSSLQSHLQIHTGNKPFECTLCDLKFYRAYDLKKHLRIHTGQKPEGRHECTVCNKKFVGKTYLDAHSRTHTGEKPFECSVCNQKFIRRDYLNIHLRTHTGERPYKCTVCDKTFSHSVSLRVHSRLHTGEKPFECSVCSKTFRQKPNLRSHFKKYHTGKIMFDCSNCDMKFFTETKLRQHTIKTHRGEKPFECTDCDKKFRTSSGLKIHVSTHTGEKSHECTVCKKTFRLKFSLKIHFRTHTGEKPYECSVCNKKFRQCTDLKTHQRIHTNEKPYDCTFCSKKFRLKRFLDIHLRSHTGEKPYKCTFCNKRCSQSSDLKTHIRTHTGEKPYECSICSKKFTQRAHLTTHLKMHKGEKLFECTVCNKKFLDGSGLRSHLRSHTGERSLKCTVCAKRYVNSRSLKEHLQTHEECQGA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-