Tpal005154.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Thrips palmi
Gene Symbol
-
Assembly
GCA_012932325.1
Location
NW:3268450-3274016[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 0.021 0.66 10.2 0.1 1 21 78 98 78 99 0.94
2 24 0.0029 0.093 12.9 0.0 1 21 151 171 151 172 0.95
3 24 0.00025 0.008 16.3 0.4 3 23 545 565 543 565 0.95
4 24 0.0003 0.0095 16.0 0.2 1 23 571 593 571 593 0.96
5 24 1.2e-05 0.00037 20.4 1.3 1 23 596 618 596 618 0.97
6 24 2.8e-06 8.8e-05 22.4 1.0 1 23 624 646 624 646 0.98
7 24 7.3e-05 0.0023 17.9 0.4 1 23 652 674 652 674 0.96
8 24 2.5e-05 0.00079 19.4 0.6 1 23 680 702 680 702 0.98
9 24 1.9e-07 6.1e-06 26.1 5.0 1 23 708 730 708 730 0.98
10 24 4.2e-06 0.00013 21.9 0.2 1 23 736 758 736 758 0.98
11 24 0.015 0.48 10.7 3.7 2 23 765 786 764 786 0.92
12 24 0.026 0.83 9.9 0.5 2 23 791 812 790 812 0.94
13 24 0.03 0.95 9.7 0.2 1 23 848 870 848 870 0.98
14 24 2.1e-05 0.00067 19.6 5.5 1 23 876 898 876 898 0.97
15 24 3.6e-06 0.00011 22.1 0.4 1 23 904 926 904 926 0.98
16 24 4.3e-07 1.4e-05 25.0 0.7 1 23 932 954 932 954 0.97
17 24 0.00091 0.029 14.5 4.2 1 23 960 982 960 982 0.98
18 24 5.9e-07 1.9e-05 24.5 1.4 1 23 988 1010 988 1010 0.99
19 24 0.00015 0.0047 17.0 1.8 3 23 1018 1038 1016 1038 0.98
20 24 0.056 1.8 8.9 1.7 1 19 1044 1062 1044 1062 0.93
21 24 5.3e-06 0.00017 21.5 0.3 1 23 1072 1094 1072 1094 0.98
22 24 1.6e-05 0.0005 20.0 1.0 1 23 1100 1122 1100 1122 0.96
23 24 8.3e-07 2.6e-05 24.1 1.6 1 23 1128 1150 1128 1150 0.98
24 24 0.0024 0.078 13.1 6.9 1 23 1156 1178 1156 1178 0.98

Sequence Information

Coding Sequence
ATGGCAAATCCAAGCCCAGTCAACCACCCAGTGCTTGTATCCGACAACGTTCCTTGGGAGCCATTTGGAAAGACAACAAGAGTTGAAGCCCAGCCCACAGAATCATCATCCCCCGGCTCATGCAGACCCAAGAAACTTACTATGATGCTAGATATGGCCTGGTTAGAACAAGAAATCAAAGATCTAGAGGACGTCAATGTGAAGAGCAGTCCAGGTACAACAAGTGATATGTTTCCATGCCCAACATGTGTGGTTGCATTCACTAGCCAGGCATATCTTGACAAACATAAAAAATATTGCCGGGGAATCAAGTCAGACCAACAAAGTTCAGCAATGATGGCGACCACAGCTGATGCACCTACAGTAACAGTTCTCTCAAATGTAAATCCCTTAATGACTCAAAGTCTTGCTCCAGAGATCAACAGAAGACCAGAAGGGAATCCCCAGGGTTATCCATGTCCATGGTGTCCCACAGTCAGCACTTCACCAGCATATCTAGAAAAACATAAAAAGCGATGTCAAAGAAAACAACATTCCCTGCAAAATTCCCATCATGCACCTGCACCGGCCATGCAACAGTCTCTTCATCAACAGGCTCCACAGGTGTACAGCCCCGGCAGCATCACCCAGGTCAAACATCAAACAGAAGCGCAGACTCAGGCTCATCATGTTCTATTGCAACCCCAGCTGCACATCGGAGAACACCACCTGTCGCAGTTTCATTTCATGGATACACTCTCGCAGTCAGTACAGGCCCAAGTTCAAGCTCAGGCTCAAGCCCATGTCCAAGCTCAGGCTCAGGCTCAAGCTCAGGCTCAAGCTCAGGCTCAAGCTCAGGCGCAAGCACATGCGCAGGCCCAGGCACAAGCTCATGCGCAAGCCCAGGCTCAGGCCCAAGCTCAGGCCCAACAAGTTCAAGAAGTGCAAGCACAAGTTCAAGCTCAGGTTCAGGCTCAGGTCCAGGCTCACATGCAGGCACAGGCCCAAGCCCAGGCTCAAGCTCAAGCCCAGGCACAAGCTCAAGCTCAAGCCCAAGCTCAAGCCCAGGCCCAAGGCCAACAAGCAGTGGTGCAAGTTCAAGTTCAGCATCAGCCGCAGCATCGGCATCAAGTCGTGGTATCTACTATACCACAACATGACCCACATAAGGAGGCATCTCCACATCCAACAAATACTCTTGTTCCTATTCATATGACGATTCCCACTCAGGAGCATGGTCAGTCCATTGTTGTAACAAGTGCTCCTTCTAGCATGTCTCAGACGTTGGGGCAAGCACTTACTGTCACAACTTCAGCGAATATGACGCAGACGCTTCAGCCTGTACAAGTGACTGCAGTAAGCACGCCTACAAGTAGTGCCCAATCTATGACGATAATGGTGCCTCTGTCATTGGGACTTCCTTCGATGCAACTCCCCCTACCAGTGCCTATGCCATCTCTTGTGCCTCTGACATTGCACCAAGAAGGTGTCAATGGCATGGAAGCCACCATAGCTGAGGCTGCAGTTGCAAGTGGCAACAGTATTAACTACATAGAAACCAGCATGTCCTCCAGCAGTGGAAAGTCAGCGCCTTATCGCCATGGTGAATTACCTCCTCGCTCGACTGATTCAGTGTCAACAAAGCTTCTTGCTTGTGGAGAGTGTGGGGAGCATTTTCCCAATAATGTTCAACTTCGTAAACATGCTTTCACTCACAACAAAGATAAGCCATTTGTGTGCACAACTTGCTGGAAGATTTTCAAAGATGGTGATGATCTTGAGAGGCACCGAGCTCTTCATAGGCCTCATCCCTGCCCTCAGTGTGGAGAGAGATTTGGACGATTGGGTCATTTGAAACGGCATGCAATGACTCACACAGGACACAAACCATATCCCTGTCCTCATTGTAGCAAGGAATTCATGGACAATGTTGATCTTAAAAGGCATTTGATGACTCATTCTGGTGAGAAGCCTTACAGATGCCAAGTTTGTGGTGATCAGTTTGCTCGCAGCAGTAACCTCAGGCGGCACAGTATCATTCATACAGGTGACAAGCCTCACAAGTGCCCAGAATGTGGTGATGGCTTTGTGGATAACTTTGACCTAAAACGTCACCTTATGACTCACACAGGAGAAAGGCCATATCATTGCAGCTTCTGTGGAGAAAGTTTTACAAGGAGCAGCAACCTTCAACGTCATCAGCGTAAGCATACTGGGGAGCGCCCTTTCGTCTGTGAACTCTGTGAGAAATCATTTGTTGACAAAATTGATTTGAAACGACATGCTAGAGTGCATTCAGGAGAGAAACCCTTTGCTTGCATTAAATGTGGAGATCATTTTGCACGTAAGCATAACTTAAGAATACATCTTAAAACTCACTCTGAAATAATTGAATGTCAGTTTTGTCATGAGCAGTTTGCATTACGGTCTCAATTAGAAGAACATGAGCAAGCTCACAAAGTTGAGCCGAAGTATGTCAGATGTATGCACTGCCAAGAGTATGTGATAGAAAGTGACATGAACAACCATTTAGTTAGTCATACGGATTTGACCCATGAGTTATTTTCTTGTCCTGTCTGTGAGCAAAAGTTTTTGGAAGAGGATGACCTCAAAGTCCATAGTAGATCTCATTTGGTTCAAAAGCCCCACACATGTGATCATTGTGGGGAGCGCTTTGCACGCAGGAGTCACCTTTCTCGTCATGCACTTACTCACCTGGATCGGAAACCATTCCCTTGTAGTGAATGTGATAAGTCGTTCTTGGACAATGTTGATCTAAAGAGACATATGATGACTCATACTGGGGAAAGGCCTTTTATTTGCACAGAGTGTGGTGAGACTTTCTCTCGATTAAGTAACCTGAAGCAGCACAGTAGAATACACACTGGGGAGAGGCCGTACCATTGTCATACTTGCAGTAAACAGTTTAGTGACAGCGGCGTTTTGAGGCGCCACGCCCTCACACATTCCGGTGTCCGTCCTTATGTTTGTCCAGAGTGTGGAGAGAGATTCAGCCAGAAGACTCATCTTATCTCCCACAACCGCACCCATTCTggtgagaagccttttggTTGTACTCAGTGTGAAGAAAAATTTACTGAAAGGAGTAATTTGAGAAGACATTCAAGAATGCATGCCCCCATGAAACCACACAAATGTGAAACGTGTGGCGAAACATTCTCTCTGTTAAGTCATGCCAAAAGTCACTGTCTGCCCTCTGCTGATGATAGACTGTTTTCTTGTCCAGAGTGCGGGGAGCAATTTGGAAGGATGAATAACTTGAAAAGGCATATCCTCAGGCATACTGGGGAGAAACCGTTTGCTTGCACGGATTGTTCGGAAAGCTTTGCAGACAAGAGCAGTCTCAAGCGTCATTCCTACACTCACACTGGTGAGAAGCCCTTTGTTTGCTCAGAGTGTGGAGAACGATTTACTCAAAGTGCCCACCTTAAATCTCACACTCGTATTCACACAGGCGAGAAGCCTTATCAGTGTCCCTTCTGTAGAGAAAGATTTACTCATCGCAATACTTTTAAAAAGCATAGGAAACTCCATGAGACTGAAGCTTCATCTTCTGCTCCTAGAACGTAG
Protein Sequence
MANPSPVNHPVLVSDNVPWEPFGKTTRVEAQPTESSSPGSCRPKKLTMMLDMAWLEQEIKDLEDVNVKSSPGTTSDMFPCPTCVVAFTSQAYLDKHKKYCRGIKSDQQSSAMMATTADAPTVTVLSNVNPLMTQSLAPEINRRPEGNPQGYPCPWCPTVSTSPAYLEKHKKRCQRKQHSLQNSHHAPAPAMQQSLHQQAPQVYSPGSITQVKHQTEAQTQAHHVLLQPQLHIGEHHLSQFHFMDTLSQSVQAQVQAQAQAHVQAQAQAQAQAQAQAQAQAQAHAQAQAQAHAQAQAQAQAQAQQVQEVQAQVQAQVQAQVQAHMQAQAQAQAQAQAQAQAQAQAQAQAQAQGQQAVVQVQVQHQPQHRHQVVVSTIPQHDPHKEASPHPTNTLVPIHMTIPTQEHGQSIVVTSAPSSMSQTLGQALTVTTSANMTQTLQPVQVTAVSTPTSSAQSMTIMVPLSLGLPSMQLPLPVPMPSLVPLTLHQEGVNGMEATIAEAAVASGNSINYIETSMSSSSGKSAPYRHGELPPRSTDSVSTKLLACGECGEHFPNNVQLRKHAFTHNKDKPFVCTTCWKIFKDGDDLERHRALHRPHPCPQCGERFGRLGHLKRHAMTHTGHKPYPCPHCSKEFMDNVDLKRHLMTHSGEKPYRCQVCGDQFARSSNLRRHSIIHTGDKPHKCPECGDGFVDNFDLKRHLMTHTGERPYHCSFCGESFTRSSNLQRHQRKHTGERPFVCELCEKSFVDKIDLKRHARVHSGEKPFACIKCGDHFARKHNLRIHLKTHSEIIECQFCHEQFALRSQLEEHEQAHKVEPKYVRCMHCQEYVIESDMNNHLVSHTDLTHELFSCPVCEQKFLEEDDLKVHSRSHLVQKPHTCDHCGERFARRSHLSRHALTHLDRKPFPCSECDKSFLDNVDLKRHMMTHTGERPFICTECGETFSRLSNLKQHSRIHTGERPYHCHTCSKQFSDSGVLRRHALTHSGVRPYVCPECGERFSQKTHLISHNRTHSGEKPFGCTQCEEKFTERSNLRRHSRMHAPMKPHKCETCGETFSLLSHAKSHCLPSADDRLFSCPECGEQFGRMNNLKRHILRHTGEKPFACTDCSESFADKSSLKRHSYTHTGEKPFVCSECGERFTQSAHLKSHTRIHTGEKPYQCPFCRERFTHRNTFKKHRKLHETEASSSAPRT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-