Basic Information

Insect: Thrips palmi
Gene Symbol: -
Assembly: GCA_012932325.1
Location: NW:4850638-4866980[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 29 2.9e-05 0.00093 19.2 1.1 1 23 142 164 142 164 0.96

2 29 0.016 0.5 10.6 3.2 1 20 170 189 170 192 0.93

3 29 1.6e-05 0.00049 20.1 1.3 1 23 198 220 198 220 0.99

4 29 2.6e-05 0.00082 19.4 2.6 1 21 226 246 226 248 0.94

5 29 3.7e-05 0.0012 18.9 4.4 1 23 254 276 254 276 0.99

6 29 4.6e-05 0.0015 18.6 5.3 1 23 282 304 282 304 0.97

7 29 3.3e-06 0.00011 22.2 5.0 1 23 310 332 310 332 0.97

8 29 2.1e-06 6.6e-05 22.8 2.8 1 23 338 360 338 360 0.98

9 29 6.3e-06 0.0002 21.3 5.0 1 23 366 388 366 388 0.98

10 29 7.7e-05 0.0025 17.9 5.5 1 23 394 416 394 416 0.98

11 29 0.00015 0.0048 17.0 7.1 1 23 422 444 422 444 0.96

12 29 0.00072 0.023 14.8 8.4 1 23 450 472 450 472 0.96

13 29 7.9e-05 0.0025 17.8 5.9 1 23 478 500 478 500 0.97

14 29 0.00073 0.023 14.8 4.3 1 23 506 528 506 528 0.98

15 29 4.9e-06 0.00015 21.7 4.6 1 23 534 556 534 556 0.98

16 29 6.5e-06 0.00021 21.3 5.0 1 23 562 584 562 584 0.98

17 29 3.3e-06 0.00011 22.2 5.5 1 23 590 612 590 612 0.98

18 29 0.00012 0.0038 17.3 5.5 1 23 618 640 618 640 0.97

19 29 1.4e-05 0.00045 20.2 5.6 1 23 646 668 646 668 0.97

20 29 1e-06 3.3e-05 23.8 2.9 1 23 674 696 674 696 0.98

21 29 1.1e-05 0.00035 20.5 2.7 1 23 702 726 702 726 0.97

22 29 1.7e-07 5.4e-06 26.2 2.6 1 23 732 754 732 754 0.98

23 29 5e-06 0.00016 21.6 2.7 1 23 765 787 765 787 0.97

24 29 1.2e-06 4e-05 23.5 1.3 1 23 793 815 793 815 0.98

25 29 1.4e-05 0.00043 20.2 7.2 1 23 821 843 821 843 0.98

26 29 3e-05 0.00095 19.2 6.9 1 23 849 871 849 871 0.98

27 29 9.1e-05 0.0029 17.6 6.6 1 23 877 899 877 899 0.98

28 29 0.004 0.13 12.5 10.7 1 21 905 925 905 927 0.94

29 29 0.00013 0.0041 17.2 0.3 1 23 933 955 933 955 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	29	2.9e-05	0.00093	19.2	1.1	1	23	142	164	142	164	0.96
2	29	0.016	0.5	10.6	3.2	1	20	170	189	170	192	0.93
3	29	1.6e-05	0.00049	20.1	1.3	1	23	198	220	198	220	0.99
4	29	2.6e-05	0.00082	19.4	2.6	1	21	226	246	226	248	0.94
5	29	3.7e-05	0.0012	18.9	4.4	1	23	254	276	254	276	0.99
6	29	4.6e-05	0.0015	18.6	5.3	1	23	282	304	282	304	0.97
7	29	3.3e-06	0.00011	22.2	5.0	1	23	310	332	310	332	0.97
8	29	2.1e-06	6.6e-05	22.8	2.8	1	23	338	360	338	360	0.98
9	29	6.3e-06	0.0002	21.3	5.0	1	23	366	388	366	388	0.98
10	29	7.7e-05	0.0025	17.9	5.5	1	23	394	416	394	416	0.98
11	29	0.00015	0.0048	17.0	7.1	1	23	422	444	422	444	0.96
12	29	0.00072	0.023	14.8	8.4	1	23	450	472	450	472	0.96
13	29	7.9e-05	0.0025	17.8	5.9	1	23	478	500	478	500	0.97
14	29	0.00073	0.023	14.8	4.3	1	23	506	528	506	528	0.98
15	29	4.9e-06	0.00015	21.7	4.6	1	23	534	556	534	556	0.98
16	29	6.5e-06	0.00021	21.3	5.0	1	23	562	584	562	584	0.98
17	29	3.3e-06	0.00011	22.2	5.5	1	23	590	612	590	612	0.98
18	29	0.00012	0.0038	17.3	5.5	1	23	618	640	618	640	0.97
19	29	1.4e-05	0.00045	20.2	5.6	1	23	646	668	646	668	0.97
20	29	1e-06	3.3e-05	23.8	2.9	1	23	674	696	674	696	0.98
21	29	1.1e-05	0.00035	20.5	2.7	1	23	702	726	702	726	0.97
22	29	1.7e-07	5.4e-06	26.2	2.6	1	23	732	754	732	754	0.98
23	29	5e-06	0.00016	21.6	2.7	1	23	765	787	765	787	0.97
24	29	1.2e-06	4e-05	23.5	1.3	1	23	793	815	793	815	0.98
25	29	1.4e-05	0.00043	20.2	7.2	1	23	821	843	821	843	0.98
26	29	3e-05	0.00095	19.2	6.9	1	23	849	871	849	871	0.98
27	29	9.1e-05	0.0029	17.6	6.6	1	23	877	899	877	899	0.98
28	29	0.004	0.13	12.5	10.7	1	21	905	925	905	927	0.94
29	29	0.00013	0.0041	17.2	0.3	1	23	933	955	933	955	0.98

Sequence Information

Coding Sequence: ATGTCGGGCTTCCCTATGCAAGAAATTAAAGGTCACATGATGGACTTGAGAACGGTAGACGGAAGCATTCTAAAGATAACCACACCTAATGGGGAACAGGAGCTTGCCAAAACATTAGGTGTTGAAATGGTTCAAAATATGTATAAAGTTAATGTTGAAGATATAAATCAACTTTTAGCCTATCATGAAGTTTTTGGTAAACTTCAAAATGAAATGGTGACAGCTGGACAACCAACTAATTCTACTACTGTGACCACAACTACCTCACAACCTCAACaacctgcagctgcagcaatAACAGCTGCACGACAACATGCAGAACCAGCTGTTCTTCAAAATGGTGTGATGGTGAAAACATTAAATGAAGGAGGTGAAGGTGTGTCAGGTACCACTTCACCCTCTTCATTAGCCTCAGCTGTAACTCACGCTTGTGATGTGTGCGGCAAAATGTTTCCCTTCCGGTACCAGCTCATAGTCCATCGTCGGTACCACACAGAACGAAAACCATTTACTTGTCAGGTTTGTGGTAAGGCATTTTCATGTGCGGCTGAACTGACAAGGCATGGGAAGTGTCACTTAGGAGGCAGCATGTACACATGTTCAGTGTGTTTCCATGTGTTTGCCAATGCTGTTTCATTAGAACGCCATATGAAGAGACATTCAACAGAGAAACCTTACGCTTGTCCTGTCTGTGGTAAATCATTTGCAAGAAAAGAACACCTTGACAATCATACTAGATGCCACACAGGAGAGACGCCTTACCGTTGTCAATACTGTGCTAAGTCTTTTACCCGTAAGGAGCATATGGTAAATCATGTGCGAAAGCACACTGGTGAAACTCCACATCGCTGTGATATTTGCAAGAAATCATTTACAAGAAAGGAACATTTTATGAACCATGTCATGTGGCACACGGGTGAAACTCCTCATTCTTGTCAGGTCtgtgacaagaaattcactcGGAAGGAACATCTTGTGAACCACATGCTCACGCACTCCAATGAGACGCCTTTTCGCTGTGAAACCTGTGGGAAGACATTTGTAAGGAAGGAACACTTCACGAGCCACATCATGTGGCACACTGGTGAGACGCCGCATCAATGTGATCTCTGTGGGAAAAAATTCACCCGTAAGGAGCACCTGTTGAACCACGTCCGGCAGCATACAGGTGAGATGCCGCACCAGTGCCAACTCTGTTCCAAGAGGTTCTCTCGAAAGGAGCACCTAATTATCCACACCCGCCTGCACACAGGTGAAACGCCGCACCATTGTGAATACTGCCCCAAGAAATTCTCCCGTAAGGAACACCTATTGATTCACACCCGTCTACACACAGGTGAAACACCACATCATTGTGAATACTGCCCCAAGAAATTTGCTCGTAAGGAGCATCTTATTATCCATACCCGCCATCACACAGGTGAAACTCCACACCATTGCGAATACTGCCCCAAGAAATTCGCTCGTAAGGAGCACCTTGTGATCCACACTCGGATGCACACAGGTGAAATGCCGTACCACTGTGAATACTGTCCCAAGAAATTTGCTCGTAAGGAGCATCAAATTATCCACACGCGTCTTCACACAGGTGAAATGCCGCACCAGTGTGAATACTGTCCCAAGAAATTCTCTCGTAAGGAACACCTAATAATTCACACCCGTCTGCACACAGGTGAGATGCCTCATCAGTGCGAATATTGCCCCAAGAAATTTTCTCGTAAGGAACATCTCATTATCCACACGCGTCAACACACAGGTGAAACGCCGCATCAGTGTGAGTACTGTCCCAAGAAATTCTCTCGTAAGGACCATCTTACTATCCACACTCGACTACATACAGGTGAAACCCCCCATCGGTGTGAGTTCTGCTCAAAAGCGTTCACACGTAAAGAACACCTGTTGAACCACGTTCGTCAGCACACTGGCGAGTCACCACATCGCTGTGGATATTGCTCCAAATCTTTCACTCGGAAAGAACACCTGATCAACCATGTGCGTCAACACACAGGTGAAACTCCATTCCGGTGCCAGTACTGTCCAAAGGCCTTCACAAGAAAGGATCATCTCGTGAACCACGTCCGCCAGCACACGGGGGAGACGCCGCACAAGTGCCAGGAGCCTGGGTGCAGCAAGTCCTTCTCCCGGAAGGAGCACCTGGTGATACACATCCGGTCGCATACGGGAGAGACGCCGTACCGCTGTCAGTACTGCCCGAAGGCGTTTGCGCGCAAGGACCACCTGACGAACCACATTCGCCAGCATACGGGCGAGACTCCTCACAAGTGCCAGGAGCACCCGTGCAGCTACTGCCCGAAAATATTCTCGAGAAAAGAGCACCTGGTGATTCACGTGAGGAAGCACACGGGCGAGACCCCGTACCGCTGTCAGTACTGTCCCAAGGCGTTTGCCAGGAAAGACCACCTTGTCATACATGTGCGCCAGCACACAGGGGAGACTCCGCACAAGTGCAAGTATTGCACAAAGGCATTTACTAGAAAAGAACACCTAAATAATCATGTCCGTCAACACACTGGTGAGTCTCCGCACCGCTGTCAGTTTTGCTCCAAGTCGTTCACTCGCAAGGAGCACCTGACTAACCACGTGCGGATCCACACAGGCGAATCACCCCATCGATGTGAGTTCTGCGCCAAGACCTTCACAAGAAAGGAGCATTTGACGAACCATCTTCGGCAGCATACAGGAGAGACTCCTCATTGCTGCCATGTCTGCTCCAAACCCTTCACTCGTAAAGAGCATCTCATCAATCATATGCGTTGCCACACAGGGGAGCGGCCTTTCGTCTGTGGAGAATGTGGGAAGTCGTTCCCTCTTAAGGGAAATCTTCTTTTCCATCAACGTTCACACAATAAAGGAACCACGGCTGCAGACAGGCCATTCCGGCCTCCGGGATTCCCTCCACCTGAACCCTTGTGGCGGGCTCCAGGATTAGTAGCGGGTGTTCGTCCAGATGGTGTAGAAGGGGAGCAAGCTGAGCAGTCTCAGCAACCTGGGCAGTCCCAGGCTCACCCAGCACAAACTCAAACTCAGGCACAGACACAAGCACAACCTCAGCCTCAGGCCCTTGCGCAGCCTCAGCCTGCCCAAGCACAAGCCCCAACGACCCATGAATAG
Protein Sequence: MSGFPMQEIKGHMMDLRTVDGSILKITTPNGEQELAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQNEMVTAGQPTNSTTVTTTTSQPQQPAAAAITAARQHAEPAVLQNGVMVKTLNEGGEGVSGTTSPSSLASAVTHACDVCGKMFPFRYQLIVHRRYHTERKPFTCQVCGKAFSCAAELTRHGKCHLGGSMYTCSVCFHVFANAVSLERHMKRHSTEKPYACPVCGKSFARKEHLDNHTRCHTGETPYRCQYCAKSFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHSCQVCDKKFTRKEHLVNHMLTHSNETPFRCETCGKTFVRKEHFTSHIMWHTGETPHQCDLCGKKFTRKEHLLNHVRQHTGEMPHQCQLCSKRFSRKEHLIIHTRLHTGETPHHCEYCPKKFSRKEHLLIHTRLHTGETPHHCEYCPKKFARKEHLIIHTRHHTGETPHHCEYCPKKFARKEHLVIHTRMHTGEMPYHCEYCPKKFARKEHQIIHTRLHTGEMPHQCEYCPKKFSRKEHLIIHTRLHTGEMPHQCEYCPKKFSRKEHLIIHTRQHTGETPHQCEYCPKKFSRKDHLTIHTRLHTGETPHRCEFCSKAFTRKEHLLNHVRQHTGESPHRCGYCSKSFTRKEHLINHVRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGETPHKCQEPGCSKSFSRKEHLVIHIRSHTGETPYRCQYCPKAFARKDHLTNHIRQHTGETPHKCQEHPCSYCPKIFSRKEHLVIHVRKHTGETPYRCQYCPKAFARKDHLVIHVRQHTGETPHKCKYCTKAFTRKEHLNNHVRQHTGESPHRCQFCSKSFTRKEHLTNHVRIHTGESPHRCEFCAKTFTRKEHLTNHLRQHTGETPHCCHVCSKPFTRKEHLINHMRCHTGERPFVCGECGKSFPLKGNLLFHQRSHNKGTTAADRPFRPPGFPPPEPLWRAPGLVAGVRPDGVEGEQAEQSQQPGQSQAHPAQTQTQAQTQAQPQPQALAQPQPAQAQAPTTHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -