Tpal006203.1
Basic Information
- Insect
- Thrips palmi
- Gene Symbol
- -
- Assembly
- GCA_012932325.1
- Location
- NW:1080400-1098834[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.17 73 3.2 0.3 17 40 175 195 171 198 0.85 2 8 0.041 17 5.2 0.8 14 30 200 217 188 227 0.74 3 8 0.0001 0.043 13.5 1.0 13 40 227 255 220 258 0.85 4 8 0.065 28 4.5 0.7 18 40 260 279 257 282 0.76 5 8 0.019 8.1 6.2 0.8 15 32 285 303 275 310 0.71 6 8 0.002 0.86 9.3 0.5 18 41 316 336 313 338 0.86 7 8 0.16 67 3.3 0.7 14 29 340 355 335 366 0.77 8 8 0.0057 2.4 7.9 1.6 16 41 370 392 361 393 0.84
Sequence Information
- Coding Sequence
- ATGTGTCTCCCTCCTAGTTTTAAGTGCAATGCACACGGTATGCAGGACTTACTGTTCTCAACGTCCAACTTCTTTAAGATTAAAGTTGGTGGCGCACTTGGGGCCGTGAAACGCAGCCGCAGTGTTCCCAGCGGTCCCTCGTCGGCTTGCCCGAGGCGGATTACCCGAAGAGTTGGTGGCGCACTTGGGGCCGTGAAACGCAGCCGCAGTGTTCCCAGCGGTCCCTCGTCGGCTTGCCCGAGGCGGATTACCCGAAGCGACGCTCGGTCTAGTTTCGGTGGCGCTCGGTCCATTCCGGAGCAGCCACCTCACCAGAACGGCACTGcagtaggggtaggttggAATTCAGAGCACGAGTCGGTGCGCATCATTCCTTTCTGCATTCTGATGTCTTCGCCTGCACCAAAGCAGGCTGTCCCTGCCAGGCGCATCATGCCCCTCGAGAGCTCACtgtgcggcgaggtggcggcatcgtcagcggcgccgcgtgttCCACGTGGCAAGCGTGGAGGGCAGCAGGCACTCCACTGTGCAGTCTGCGAGAAGGAGTTCCGATTCAAGAGTATCCTCCGGCAGCACTTACGggtccacaccggggagaagcctttcgagtgcacgtTCTGCCAGAAGAAGTTTCCTCGAAAGGGTCAGCTAGCAACGCACCTTcggatccacaccggggagaagcctttcgagtgcatgTTCTGCGAAGAGATGTTTGTTCAAAAGGCACACCTAACAACGCACCTCCGAACCCACATCAAGGTTAAACCGTTTGAGTGCGCAGTTTGCCAGAAGAAGTTTACTCGAAATGGGAGTCTGAAGTTGCACCTTCggacccacaccggggagaagcctttcgagtgcacgtTCTGCGAGAAAAAGTTTGCTCAAAGTGGACAACTAACATTGCACCTACAGACCCACACCGGGgtgaagcctttcgagtgtgtGATTTGCGAGAAGAGGTTCACGCGAGGTGAAAGTCTGAGGACGCACCTTCGCACTCACACTGAGGAGAAGCCGttcgagtgcacagtgtgcAAGAAGAGTTTCTCTGCCAGTAGCGCTCTAGGAATGCACCAGCGGAcccacactggggagaagccttacgAGTGCACCGTTTGCAAAAACAAGTTTACTGCAAGTTCGAGTTTGAGAACGCACCTTCGCACTCACACCGGGGTGAAGCCTTAA
- Protein Sequence
- MCLPPSFKCNAHGMQDLLFSTSNFFKIKVGGALGAVKRSRSVPSGPSSACPRRITRRVGGALGAVKRSRSVPSGPSSACPRRITRSDARSSFGGARSIPEQPPHQNGTAVGVGWNSEHESVRIIPFCILMSSPAPKQAVPARRIMPLESSLCGEVAASSAAPRVPRGKRGGQQALHCAVCEKEFRFKSILRQHLRVHTGEKPFECTFCQKKFPRKGQLATHLRIHTGEKPFECMFCEEMFVQKAHLTTHLRTHIKVKPFECAVCQKKFTRNGSLKLHLRTHTGEKPFECTFCEKKFAQSGQLTLHLQTHTGVKPFECVICEKRFTRGESLRTHLRTHTEEKPFECTVCKKSFSASSALGMHQRTHTGEKPYECTVCKNKFTASSSLRTHLRTHTGVKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01435344;
- 90% Identity
- iTF_01435344;
- 80% Identity
- iTF_01435344;