Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.037 16 5.3 0.1 14 41 28 52 24 53 0.81

2 9 0.00075 0.32 10.7 2.3 13 41 55 80 48 82 0.83

3 9 0.0068 2.9 7.7 0.6 17 41 87 108 81 111 0.84

4 9 0.77 3.3e+02 1.1 2.3 16 40 114 135 105 138 0.77

5 9 0.0041 1.8 8.4 1.8 13 41 139 164 132 166 0.79

6 9 9.3e-05 0.04 13.6 2.2 17 41 171 192 165 195 0.88

7 9 0.49 2.1e+02 1.7 5.2 14 41 196 220 192 223 0.78

8 9 0.024 10 5.9 3.3 15 30 225 241 217 249 0.76

9 9 0.0063 2.7 7.8 2.2 6 39 245 274 242 283 0.80

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.037	16	5.3	0.1	14	41	28	52	24	53	0.81
2	9	0.00075	0.32	10.7	2.3	13	41	55	80	48	82	0.83
3	9	0.0068	2.9	7.7	0.6	17	41	87	108	81	111	0.84
4	9	0.77	3.3e+02	1.1	2.3	16	40	114	135	105	138	0.77
5	9	0.0041	1.8	8.4	1.8	13	41	139	164	132	166	0.79
6	9	9.3e-05	0.04	13.6	2.2	17	41	171	192	165	195	0.88
7	9	0.49	2.1e+02	1.7	5.2	14	41	196	220	192	223	0.78
8	9	0.024	10	5.9	3.3	15	30	225	241	217	249	0.76
9	9	0.0063	2.7	7.8	2.2	6	39	245	274	242	283	0.80

Coding Sequence: ATGTCCCGCGAGCGTGAGCCCCGTCACCGCACGGCTGGATCGTCAGCGTCCGTGCGTGCTCCACGCGGTGCCTGCAATGGAGAGAAGCGTCTGGAGTGTCCAGTGTGCGAGAAGCAGTTCGCCTTTAGAAGTCAACTAGAAACGCACCTTCGGACCCACACCGAGGAGAAGCCCTTCGAATGCACAGTTTGCAGGAAGAGCTTCACTCAAAGTGGAAATCTCAGAAGGCATCTTCggacccacaccggggagaagcctttcgagtgcgcaGTTTGCAGGCAGAAGTTCAGTCGAAGTGGTAGTCTCAGAGCACAccttcgcacccacaccggggagaagccttttgagtgcacagtttgcaacatGAAGTTCACTGAAAGTGGAAGTCTCAGAACGCATCTTCgaatccacaccggggagaagcctttcgagtgcacagtttgccaGAAAAAGTTCACTCGAAGTGGAGATCTTAGAAACCAccttcgcacccacaccggggagaagcctttcgagtgcacagtttgcaagaaGAAGTTCAATGAAAGTAGTAATCTGAGAAAGCACCTGCGCACCCACACCCGGGAGAAGCCTtccgagtgcacagtttgcaagaaGAAGTTCACAAAAAGTTGTTATCTGAGAACGCAccttcgcacccacaccggggagaagcctttcgagtgcaaaGTTTGCAATAAGAAGTTCGCTCGAAGTGGACACCTTAGCGAACACGTCCGCATCCACACTGGGAAGAAGCGTTTCGAGTGCACCGTTTGCAAAAAGAAGTTTGTTCAAAGTGGACAGCTTCGAAGGCACCTTCTGACGCACACCAAGGATACGCATCGTGAGTGA
Protein Sequence: MSREREPRHRTAGSSASVRAPRGACNGEKRLECPVCEKQFAFRSQLETHLRTHTEEKPFECTVCRKSFTQSGNLRRHLRTHTGEKPFECAVCRQKFSRSGSLRAHLRTHTGEKPFECTVCNMKFTESGSLRTHLRIHTGEKPFECTVCQKKFTRSGDLRNHLRTHTGEKPFECTVCKKKFNESSNLRKHLRTHTREKPSECTVCKKKFTKSCYLRTHLRTHTGEKPFECKVCNKKFARSGHLSEHVRIHTGKKRFECTVCKKKFVQSGQLRRHLLTHTKDTHRE

Sequence clustering based on sequence similarity using MMseqs2