Basic Information

Insect: Thrips palmi
Gene Symbol: -
Assembly: GCA_012932325.1
Location: NW:4328907-4343097[-]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.023 9.7 6.0 4.0 12 41 27 53 20 55 0.81

2 17 0.44 1.9e+02 1.9 1.1 17 29 60 72 54 83 0.75

3 17 0.6 2.6e+02 1.4 2.3 13 29 84 100 73 110 0.69

4 17 0.022 9.3 6.0 4.2 1 41 101 137 95 139 0.84

5 17 0.0023 1 9.1 1.8 2 41 130 165 129 167 0.88

6 17 0.37 1.6e+02 2.1 0.7 17 29 172 184 166 194 0.75

7 17 0.2 86 2.9 0.8 13 29 196 212 185 222 0.70

8 17 0.19 83 3.0 0.7 13 29 224 240 213 250 0.70

9 17 0.7 3e+02 1.2 2.8 13 29 252 268 241 278 0.69

10 17 0.0091 3.9 7.2 2.9 1 41 269 305 265 306 0.84

11 17 0.0022 0.93 9.2 1.7 2 41 298 333 297 335 0.88

12 17 0.33 1.4e+02 2.3 0.6 17 29 340 352 334 364 0.76

13 17 0.19 81 3.0 0.8 13 29 364 380 353 391 0.70

14 17 0.38 1.6e+02 2.0 3.0 13 33 392 409 381 418 0.69

15 17 1.6e-06 0.00069 19.3 2.5 1 41 409 445 406 447 0.90

16 17 7.2e-05 0.031 14.0 2.2 17 41 452 473 445 475 0.89

17 17 6.4e-06 0.0027 17.3 1.2 14 41 477 501 473 502 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.023	9.7	6.0	4.0	12	41	27	53	20	55	0.81
2	17	0.44	1.9e+02	1.9	1.1	17	29	60	72	54	83	0.75
3	17	0.6	2.6e+02	1.4	2.3	13	29	84	100	73	110	0.69
4	17	0.022	9.3	6.0	4.2	1	41	101	137	95	139	0.84
5	17	0.0023	1	9.1	1.8	2	41	130	165	129	167	0.88
6	17	0.37	1.6e+02	2.1	0.7	17	29	172	184	166	194	0.75
7	17	0.2	86	2.9	0.8	13	29	196	212	185	222	0.70
8	17	0.19	83	3.0	0.7	13	29	224	240	213	250	0.70
9	17	0.7	3e+02	1.2	2.8	13	29	252	268	241	278	0.69
10	17	0.0091	3.9	7.2	2.9	1	41	269	305	265	306	0.84
11	17	0.0022	0.93	9.2	1.7	2	41	298	333	297	335	0.88
12	17	0.33	1.4e+02	2.3	0.6	17	29	340	352	334	364	0.76
13	17	0.19	81	3.0	0.8	13	29	364	380	353	391	0.70
14	17	0.38	1.6e+02	2.0	3.0	13	33	392	409	381	418	0.69
15	17	1.6e-06	0.00069	19.3	2.5	1	41	409	445	406	447	0.90
16	17	7.2e-05	0.031	14.0	2.2	17	41	452	473	445	475	0.89
17	17	6.4e-06	0.0027	17.3	1.2	14	41	477	501	473	502	0.91

Sequence Information

Coding Sequence: ATGATCACGCGGAAGAAATTTTCCCAGTGCCCTGTTCGAAACGGTCCACTTTGCGACGCCAATAGCCTCAGAACACGCACAAAAAAAGAGTCTTGTGAATGTCCAGTTTGCAAAAAGAAGATAAGCCATCGACGCAATCTACCGACTCATCTCAGGAGGcatacaggggagaagcctttcgagtgcacagtttgcaacaagaagtttaaTCAAGCAAGCGATGTCAAAATACATCTCAGAACTcatacaggggagaagcctttcgagtgcgcagtttgcaacaagaagtttaaTCATGCAAGCAAGGTCAAAATACATCTCAGAACCCATACAGGGGAGAAGTCTTTCGAGTGCccagtttgcaacaagaagtttaaGCATGCAAGCACTGTCAAAAGTCATCTCAGAACCcacacaggggagaagccttttgaatgcacagtttgcaacaagaagtttaaTGAAGCAAGCGATCTCAGGAAACATCTCAGAACCcatacaggggagaagcctttcgagtgtgctgtttgcaacaagaagtttaaACAAGCAAGCGATGTCAAAATACATCTCAGAACTcatacaggggagaagcctttcgagtgcgcagtttgcaacaagaagtttaaTCAAGCAAGCGATGTCAAAATACATCTCAGAACTcatacaggggagaagcctttcgagtgcgcagtttgcaacaagaagtttaaTCAAGCAAGCGATGTCAAAATACATCTCAGAACTcatacaggggagaagcctttcgagtgcacagtttgcaacaagaagtttaaTCATGCAAGCAAGGTCAAAATACATCTCAGAACCCATACAGGGGAGAAGTCTTTCGAGTGCccagtttgcaacaagaagtttaaGCATGCAAGCACTGTCAAAAGTCATCTCAGAACCcacacaggggagaagccttttgaatgcacagtttgcaacaagaagtttaaTGAAGCAAGCGATCTCAGGAAACATCTCAGAACCcatacaggggagaagcctttcgagtgtgctgtttgcaacaagaagtttaaACAAGCAAGCGATGTCAAAATACATCTCAGAACTcatacaggggagaagcctttcgagtgcgcagtttgcaacaagaagtttaaTCAAGCAAGCGATGTCAAAATACATCTCAGAACTcatacaggggagaagcctttcgagtgcacagtttgcaacaagaagtttagTCATGCAAGCAAGGTCAAAATACATCTCAGAACCCATACAGGGGAGAAGTCTTTCGAGTGCgcagtttgcaacaagaagttcagtaGAACGGACAATCTCAGAACTCATCTCAGAACCCATACAGGGGAGCAGCCTtacgagtgcacagtttgcaataAGAAGTTCAGTAGAACGGGCAATCTCAGAACTCATCTCAGAACCCATACAGGGGAGAAGTCTTTCGAGTGCgcagtttgcaacaagaagttcagtaGAACGGACAATCTCAGAACTCATCTCAGAACCCATACAGGGTAG
Protein Sequence: MITRKKFSQCPVRNGPLCDANSLRTRTKKESCECPVCKKKISHRRNLPTHLRRHTGEKPFECTVCNKKFNQASDVKIHLRTHTGEKPFECAVCNKKFNHASKVKIHLRTHTGEKSFECPVCNKKFKHASTVKSHLRTHTGEKPFECTVCNKKFNEASDLRKHLRTHTGEKPFECAVCNKKFKQASDVKIHLRTHTGEKPFECAVCNKKFNQASDVKIHLRTHTGEKPFECAVCNKKFNQASDVKIHLRTHTGEKPFECTVCNKKFNHASKVKIHLRTHTGEKSFECPVCNKKFKHASTVKSHLRTHTGEKPFECTVCNKKFNEASDLRKHLRTHTGEKPFECAVCNKKFKQASDVKIHLRTHTGEKPFECAVCNKKFNQASDVKIHLRTHTGEKPFECTVCNKKFSHASKVKIHLRTHTGEKSFECAVCNKKFSRTDNLRTHLRTHTGEQPYECTVCNKKFSRTGNLRTHLRTHTGEKSFECAVCNKKFSRTDNLRTHLRTHTG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01435209;
90% Identity: iTF_01435209;
80% Identity: iTF_01435209;