Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.26 1.1e+02 2.6 1.2 14 28 28 42 20 54 0.78

2 7 0.013 5.3 6.8 1.4 14 41 56 80 45 82 0.84

3 7 0.00038 0.16 11.7 0.4 17 41 87 108 81 110 0.88

4 7 0.0056 2.4 7.9 0.5 17 41 115 136 109 138 0.88

5 7 0.0002 0.087 12.5 3.6 14 41 140 164 136 166 0.90

6 7 0.00016 0.067 12.9 1.2 17 41 171 192 165 194 0.88

7 7 0.00068 0.29 10.8 0.8 17 41 199 220 193 221 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.26	1.1e+02	2.6	1.2	14	28	28	42	20	54	0.78
2	7	0.013	5.3	6.8	1.4	14	41	56	80	45	82	0.84
3	7	0.00038	0.16	11.7	0.4	17	41	87	108	81	110	0.88
4	7	0.0056	2.4	7.9	0.5	17	41	115	136	109	138	0.88
5	7	0.0002	0.087	12.5	3.6	14	41	140	164	136	166	0.90
6	7	0.00016	0.067	12.9	1.2	17	41	171	192	165	194	0.88
7	7	0.00068	0.29	10.8	0.8	17	41	199	220	193	221	0.88

Coding Sequence: ATGGCTTCCAAActgcggggcgacgccgcccaGCAACCCACTCTGTCTCGTCGGACCGCGCACGTCCGCAATCGTGCCGGGGAGAAGCCAGTCGAGTGCGCAGTCTGTCAGAAGAAGTTTAGGTACCCATGTGATCTCAAAGTTCATCTCCGAACCCATACAGGCGAGAAGCCATTCGAGTGCACAGTCTGTCTGAAGAAGTTTACAAAAGCATCGGATCTGAGAAGACATTTACGAACCCATACAGGCGAGAAGCCATTCGAGTGCACAGTCTGTCAGGAAAAGTTCAGTCAAGCATCGAATCTGAGAAGCCATTTACGGACCCATACAGGCGAAAAGCCATTCGAGTGCATAGTCTGTCTGAAGAAGTTCAGTAAAGCATCGGATCTGAGAAGCCATTTACGAACCCATACAGGCGAGAAGCGATTCGAGTGCACAGTCTGTCAGAAGAAGTTCAGTTACACAAGTCATCTCAAAACTCACCTTCGAACCCATACAGGCGAGAAGCCATTCGAGTGCACGGTCTGTTTGAAGAAGTTTAATGATACATCGAATCTGAGAAGCCATTTACGAACCCATACAGGCGAAAAGCCATTCGAGTGCACAATTTGTCAGAAGAAATTCACTCGAGAGGATAATCTTAAAATACATCTAAGAACCCATACAGAGGAGACCCCGTTCGAGTGCAGTCTGTCAGGAAAAGTTTAG
Protein Sequence: MASKLRGDAAQQPTLSRRTAHVRNRAGEKPVECAVCQKKFRYPCDLKVHLRTHTGEKPFECTVCLKKFTKASDLRRHLRTHTGEKPFECTVCQEKFSQASNLRSHLRTHTGEKPFECIVCLKKFSKASDLRSHLRTHTGEKRFECTVCQKKFSYTSHLKTHLRTHTGEKPFECTVCLKKFNDTSNLRSHLRTHTGEKPFECTICQKKFTREDNLKIHLRTHTEETPFECSLSGKV

Sequence clustering based on sequence similarity using MMseqs2