Tpal012885.1
Basic Information
- Insect
- Thrips palmi
- Gene Symbol
- -
- Assembly
- GCA_012932325.1
- Location
- NW:1475160-1483024[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0014 0.59 9.9 1.2 11 39 73 98 68 102 0.78 2 15 0.39 1.7e+02 2.0 2.6 11 38 102 125 92 130 0.69 3 15 0.0021 0.89 9.3 1.0 13 39 131 154 121 158 0.84 4 15 0.011 4.5 7.0 2.1 3 39 150 182 148 186 0.83 5 15 0.0017 0.71 9.6 3.2 13 39 187 210 176 214 0.83 6 15 0.02 8.6 6.1 1.2 14 39 216 238 211 242 0.87 7 15 0.00083 0.35 10.6 1.8 14 39 244 266 237 270 0.87 8 15 0.013 5.4 6.8 3.4 2 39 261 294 260 298 0.81 9 15 0.021 8.8 6.1 2.2 14 39 300 322 292 326 0.79 10 15 0.0091 3.9 7.2 2.3 13 39 327 350 319 354 0.81 11 15 0.006 2.6 7.8 1.1 14 39 356 378 351 382 0.82 12 15 0.00028 0.12 12.1 2.0 5 39 376 406 373 410 0.81 13 15 0.0003 0.13 12.0 1.2 4 39 403 434 400 438 0.83 14 15 0.00092 0.39 10.4 1.0 3 39 430 462 428 466 0.84 15 15 0.0025 1.1 9.0 4.3 15 41 469 492 459 493 0.84
Sequence Information
- Coding Sequence
- ATGGAGCAAATGTCGTGCAGACGTGAAAGTAGAAGTAGGACAACCAGTTCGGAAGCCAATCCTTTATCTTCAAGCGCCAAGCATTTCGAAAAGACAATGCGCAGGTGTGCTGTCGCCAACAAGATGAGCGCGGGTGGCCTCTCCGAAATGCGCCTTCAGACTCTAACGGGAATAATTCCTGTTCGACGTAGTCATCTCAAGACACGCCTTCCGACCCCATCAGAAGAGAAGTCTTTTAAGTGTacggtttgcaacaagaagttcagccTAGGTAGCCATCTGAAAACACACCTTCTGACCCATACAGGAGACAAGTCTTTTGAGTGTgcggtttgcaacaagaagttcggCCTAGGTGGCACTCTCAAGACACATCTTCTGACACATACAGGAGAGAAGTCTTTGGAGTGCgcggtttgcaacaagaagtttggCCGAGGTAGCGATCTCAAGAGACACCTTCTGACCCACACAGGAGAGAAGTCTATTGAGTGTGCGGTTTGCAACCAGAAGTTCAGCCAAGTAAGCCATCTCAAGATGCACCTTCTGACGCATACAGGAGAGAAATCTTTTGAGTGCgcggtttgcaacaagaagttcagccTAGGAAGCCGTCTTAAGAGACACCTTCTGACCCACCTAGGAGAGAAGTCTATTGAGTGTGCGGTTTGCAACCAGAAGTTCAGCCAAGTAAGCCATCTCAAGATGCACCTTCTGACGCATACAGGAGAGAAGTCTTTTGAGTGCgcggtttgcaacaagaagttcagccTAGGAAGCCGTCTCAAGAGACACCTTCTGACCCACACAGGAGAGAAGTCTATTGAGTGTGCGGTTTGCAACCAGAAGTTCAGCCAAGGAAGCCATCTCAAGATGCACCTTCTGACGCATACAGGAGAGAAGTCTTTTGAGTGTgtggtttgcaacaagaagttcagccTAGGAAGCCATCTCAAGACACACCTTCTGACCCATACAGGAGAGAAGTCTTTTGAGTGTgcggtttgcaacaagaagtttaaCAAAGGAGTCAATCTCAAGACACACCTTCTGACCCATACAGGAGAGAAGTCTTTTGAGTGTgcggtttgcaacaagaagttcaacAAAGGAGGCAATCTCAAGACACACCTTCTGATCCATACAGGAGAGAAGTCTTTTGAGTGTgcggtttgcaacaagaagttcagcaGAGGAAGCAGTCTCAAGGCACACCTTCTGACCCATACAGAAGAGAAGTCTTTTGAGTGTgcggtttgcaacaagaagtttggCCGAAGTAGCGTTCTCAAGAGACACCTTCTGACCCATACAGGAGAGAAGTCTTTTGAGTGTgcggtttgcaacaagaagttcagccTAGGTAGTGACCTCAAGAGACACCTTCTGACCCATACAGGAGGGAAGTCTTTTGAGTGTGAAATTTGCAGCAAGAAGTTCAGTCGAGCTAGTCATCTCAAGACACACCTTCGGACCCATACTTAA
- Protein Sequence
- MEQMSCRRESRSRTTSSEANPLSSSAKHFEKTMRRCAVANKMSAGGLSEMRLQTLTGIIPVRRSHLKTRLPTPSEEKSFKCTVCNKKFSLGSHLKTHLLTHTGDKSFECAVCNKKFGLGGTLKTHLLTHTGEKSLECAVCNKKFGRGSDLKRHLLTHTGEKSIECAVCNQKFSQVSHLKMHLLTHTGEKSFECAVCNKKFSLGSRLKRHLLTHLGEKSIECAVCNQKFSQVSHLKMHLLTHTGEKSFECAVCNKKFSLGSRLKRHLLTHTGEKSIECAVCNQKFSQGSHLKMHLLTHTGEKSFECVVCNKKFSLGSHLKTHLLTHTGEKSFECAVCNKKFNKGVNLKTHLLTHTGEKSFECAVCNKKFNKGGNLKTHLLIHTGEKSFECAVCNKKFSRGSSLKAHLLTHTEEKSFECAVCNKKFGRSSVLKRHLLTHTGEKSFECAVCNKKFSLGSDLKRHLLTHTGGKSFECEICSKKFSRASHLKTHLRTHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01435233;
- 90% Identity
- iTF_01435233;
- 80% Identity
- iTF_01435233;