Tpal007219.1
Basic Information
- Insect
- Thrips palmi
- Gene Symbol
- Snapc4
- Assembly
- GCA_012932325.1
- Location
- NW:4917293-4922720[-]
Transcription Factor Domain
- TF Family
- MYB
- Domain
- Myb_DNA-binding domain
- PFAM
- PF00249
- TF Group
- Helix-turn-helix
- Description
- This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 8.7e-06 0.0076 16.0 0.0 14 46 248 283 247 283 0.89 2 5 1.7e-10 1.5e-07 31.1 0.0 3 39 291 329 289 336 0.90 3 5 1.1e-10 9.5e-08 31.7 0.2 1 42 342 387 342 389 0.96 4 5 2.5e-13 2.2e-10 40.2 0.0 1 46 397 442 397 442 0.97 5 5 1.8e-13 1.6e-10 40.6 0.3 3 41 450 488 450 493 0.95
Sequence Information
- Coding Sequence
- ATGGATGACACTGAAGAGGAGAAAGTGCAGCTTTTGGAATCTCTCAGGCTCCAAGACGCAGCTCTGTCAACAACGGTCGACGAGTCGATCGTCGCCCTAAACAGCGACTCGGATTCGGAAGATGATAAATCCAAGTCCCCCAATAATACTCAAATTCAGACGGATCACTCCAAGTTCTCTGAACCAGCAGAGCCTGAAGAAAATGAATCAGATTCAGTCGAAGAAATTAGCTCAGACCCTTCGTGGGCTGATGCCCTTGAAGCAAACCAGGAGTACGACGCAGTTTTGGCTCAGCTTGAAGCGGAGATCAAAATGAACCTTGCAAAGGTCTCAACGCAGTTGGATGAATTGCACTCAAAACTTACAGCAGTTAATGCTGAGAGAGCTACTATGAATTTAAAAAGCCATTGGATTTATATCTTTGGAATGCCATATTTTAAAACACATGATTTGTACCCCTGCCCTTACAACAAAGACTACCACTTGAAGAAAACGAACAATGAAATTTGTTGGACTGATTTGCCGGTGtatcaccaatggattcctcagtacaaaaaaattctgaattaCGCTGTTAAAAAGTTGTCCACTGAAAAATGTGAAATAGAAGCTCAGTTCAAATTGGCCGCTCTTCGGAAAGATGCAGATTTTGCCAAACAGGCTGGGAACATTGAAAGGGCAACTGAGCTTGAGTTAGAAATAGAGGCATTTGATGTAAGTGATTTTGTCTCAAAATCTGTTGATGCAGTCATTGCCAGTGGAGACCACGATTGGCTTCAGATATCAGCAAAATATTTGGAAGGAAAGCAGTCGCCTGAAAGCTGTCGTAGCTTTTGGAACTTGTACCTTCAGCCCAAAATAAACAAAGCACCATATACCCCAGGAGAAGAAGCAAAGCTTCTGAGCCTAGCTGAAAAATATAAACAGCAAAACTGGGATCTTATTGCTGAACAGTTGGGAACTAATCGTTCAGGCTACCAATGTTTCATTGTGTTCCAAAATAAGCTAAATGAGAATATTAAAAGGAGTATGTGGGAACCTGAAGAAGACCAGAGGCTACAGAATCTTGTGGAAAAATTCCGCATTGGAGACTACATTCCCTGGGCAAAGGTGACTTACCACTTGGAAGGAAGAACTAAGAGCCAAGTTTTTAATCGTTGGTCTTATTCAATCAAACCTACCATTAAGAAAGGTCGTTTCACCCAGGAAGAGGACATTATGATTCTGGTTGGGGTTCAGATGTGGGGAGAAAACTTCCAACGCATTTCCCAATTTCTGAGTGACAGAACTACGTCCCAAATCAGGGATCGTTACAAACATTACCTTAATAGACCTGATCTGGGTATTCCCTGGACAGTAAATGATGATGAAAGGCTTCTTAAGCTAGTGGCGGAAAATGGAAGAAACTGGAAGAAGATTTGTAAGCATTTCCCATCGAAAGACAGAACACAAGTGCGTCATCGCCATACTTCATTGCTTAAATTTCGAGCAAAGTACCCTAATGCTCCTCTGACTGATGCTCCCAGCAGGTGCTATAATCCTCAAATGTATAAGGATTTCCAGGAACAGTGGGATAGAGCTAAAAAGATCCTTAATTGTAATACCATAGATGAAATGGTTAAAGCTAAGaatAATCTTGTATCATCTCTTctaaagaggaagaaaagagcTATACCTAAGCAATCCCAGAAGAAAAAGCCATCAATTATTGAAGCAGACCTTATCAACTATTTTCGCTGTAGCTATGATATACCTGGAGCATGCAGAAAACTTCAACTTAAATCGGGAGAAGTCCACAAGTATGCTGATGAGCTTGAAATGATAGTTTCAGTTCTCAAAGCCAAACTAAATTTGCCCAGTTTTGATGAATTGGATGAGGATCCAACTCTCTCTACGTCTGATAAgGAAATTTTGAAAGCTTATATTTCAAGAGGCACTGACTTCTTCAAAGATTCTCCCGCTCACTCACCAGAGGAGGTGATTCCAGAGCCAACCACTGAATCACAGTCTGAAAAGGTCATTGGGACTGTTCCTCTGCCATTGTTTAGTGATCTCAACAagccctcctcgtcctcctcatcTGACTCATCAGATTGTAATATTGATTACATTCCTTCGCATGATTTTGCCTCGCGGTATATTGATTTACCGCTGATGAACTATGAGCTGGATGCAGTTGTGGCAGACAGAAACAAGGACCCCTCATTTTATGAAATCCCTACTTTTGACTACATTGTTCCTGATGCAGCTTCTAGCCCGCCCAAAAAAGAGGAATTTGTTATGTTTCCACCAAATTTGACCTCTATAGTAGCTTTGCGGACGTTCCTCCTTAATAGACGCACTTTGGTCGATTGGGCCAATGCAAATTCGGGTCAGGTGGTAGAAGTGAATGATGAAAAACTGGCAGAAGCCCAGCGTAAGTTTGATGAGCGTATTTGGTGCCTTTTCCTTTGGCCTGCATTAATGTCAAGATATGCTCCAAGTTCTAATGATGCAATTTTCCTGGATGAAGAAACTACTAGTGTGAAATCTGACAGTTTTATGACAGGATTGAAAAGACCTAGCCCCGGTGGAAAAATAATTTCTGCCTTGGCAGCAACAGGGCAACTTATTCCAGAAGATGCACCCATTCAAAACATTGATATGCCAAGCACATCAGGTATCTCACTAACCAAATCTTCAAAGCGAAAGCAAACTAATTCAGAAACAGTTGAGAAAAGACGTAAAATTGTATTAAAGGAGGAAGATGAAGATCCGGATGATCCCGATGAAGTTATGGACATTGATTAA
- Protein Sequence
- MDDTEEEKVQLLESLRLQDAALSTTVDESIVALNSDSDSEDDKSKSPNNTQIQTDHSKFSEPAEPEENESDSVEEISSDPSWADALEANQEYDAVLAQLEAEIKMNLAKVSTQLDELHSKLTAVNAERATMNLKSHWIYIFGMPYFKTHDLYPCPYNKDYHLKKTNNEICWTDLPVYHQWIPQYKKILNYAVKKLSTEKCEIEAQFKLAALRKDADFAKQAGNIERATELELEIEAFDVSDFVSKSVDAVIASGDHDWLQISAKYLEGKQSPESCRSFWNLYLQPKINKAPYTPGEEAKLLSLAEKYKQQNWDLIAEQLGTNRSGYQCFIVFQNKLNENIKRSMWEPEEDQRLQNLVEKFRIGDYIPWAKVTYHLEGRTKSQVFNRWSYSIKPTIKKGRFTQEEDIMILVGVQMWGENFQRISQFLSDRTTSQIRDRYKHYLNRPDLGIPWTVNDDERLLKLVAENGRNWKKICKHFPSKDRTQVRHRHTSLLKFRAKYPNAPLTDAPSRCYNPQMYKDFQEQWDRAKKILNCNTIDEMVKAKNNLVSSLLKRKKRAIPKQSQKKKPSIIEADLINYFRCSYDIPGACRKLQLKSGEVHKYADELEMIVSVLKAKLNLPSFDELDEDPTLSTSDKEILKAYISRGTDFFKDSPAHSPEEVIPEPTTESQSEKVIGTVPLPLFSDLNKPSSSSSSDSSDCNIDYIPSHDFASRYIDLPLMNYELDAVVADRNKDPSFYEIPTFDYIVPDAASSPPKKEEFVMFPPNLTSIVALRTFLLNRRTLVDWANANSGQVVEVNDEKLAEAQRKFDERIWCLFLWPALMSRYAPSSNDAIFLDEETTSVKSDSFMTGLKRPSPGGKIISALAATGQLIPEDAPIQNIDMPSTSGISLTKSSKRKQTNSETVEKRRKIVLKEEDEDPDDPDEVMDID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -