Tpal010144.1
Basic Information
- Insect
- Thrips palmi
- Gene Symbol
- ttk_1
- Assembly
- GCA_012932325.1
- Location
- NW:7737144-7747572[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.3e-13 3.6e-10 39.1 0.0 2 41 395 434 394 438 0.92
Sequence Information
- Coding Sequence
- ATGATGGCCAACAGCGGCCAGCAGTACTGCCTGCGATGGAACAACCACCGCTCCAACCTGCTGACCGTCTTCGACCAGCTGCTCCAGTCCGAGGCCTTCACCGACGTCACCCTGGCCTGCGAAGGCGGCGTCTCCATCAAGTGCCACAAGAtggtgctggccgcgtgcTCGGGCTACTTCGCCGCCCTCTTCGCGGAGCTGCCCTGCAAGCACCCCGTGGTGGTGCTCAAGGACGTCAAGTACTCGGACATGAAGGCCATCCTGGAGTACATGTACCGCGGTGAGGTGAACgtcgagcagcagcagctcacCGCCCTGATCCGGGTCGCCGAGACACTCAAGGTGAAAGGCTTGGTCGAGGAGAACGGCCACCACTCCAGCTGTTCTGCTGAAGACTATAAGGACAAgcaccacaacaacaacaccatcaGCAACCCCAAGGAGGAGatgacgccgtcctcggcgccgtcgccgccgtcctccatCACCACGTCCACCGGCCTgggcgcctccagcccgccgcacagcaCCTACAAGTACCCCTTCAagggctcgccgtcgtcggacCGCGAGCGTGAccgcgagagggagagggcgcgCCTGTCGCTGCCGCTGTGGGGCCTGCCCGGagtggcgctgcccggcgtgccggccgcgcagtcctcgctgctggccgcggcctacGAGTCCGGCGACATGTCCCCGCTGCACCGCAAGAAGCTGTCctccctgctgctgcactccCGAGACACCCCCATCCTGCGGACCGTCCTGGGCCAGGcgcagggcgccgagggcggcgcggccggcaacgGCCAGGGAGCCGCGAgctcgcggggcagcgcggcgggtgcgAGCGCGGGCGCtgcccagggccaggccgactCGTCGCAGCCCGTGTCCCTCGTCTGCCACCCCGACTCCCACGACGCCAGGCCCGGCTCGCACGCCCACTCCAACGGCTACATGTACGACTTCGAGAAGATAAAACAGGAAGGCAACGAaggctcgccctcgccctacACTGACACCTCGATGACGGAGGAGGATCTGGAAAGGTCTCGAATGATGATTCCGTCCTCGTCTCCTCTGAGCGCCGCCGACATGCGAGGCGTGTCGTCCAACATCGTGCCCTACGTCCAGCAGCAGAAGCCCGAGTGGAAGCGCTACAAGCAGTACACCCGCAACGACATCGAGTCCGCCATCGAGGCCGTGAAGACCGGCATGtcggcgctgcaggcggcgcgcaagttcggcgtgccgtcgcgcACGCTGTACGACAAGGTGAAGAAGCGCGGCATCGTCACCAACCGGCCCATCAAGCGTGCCTCCaacggcggcgccagcagcgccggcaacggcaacggcggcggcagcaacaGCGGCGGGCCCAGCACCGCCAACGGCGTCGCCTTCCCGTTCGGCAtcagcggcgccccgcagtggATGGGCCACAACTTGGAGGAGGGCGACAACGCGACGGCGCCCaacgtcggcgccgcgctgtccgccagCGGCCTGGTGGAGCACTGGATGGACAAGGCCGAGATGGAGCGGGAGGCCATCGCCGCCATGGCgtccgcgcaggccgcgcaggccgcgcacgccctGAGCATCAACTCGGGCAACTCCAACAGCCCACCCGAGGACCGCGACAGCCGCCACGGCGACCGCCACGGGGACCGCCAGGGCAGCGAGGGCGCGCGGTCGCCATCGCCCTCGCCTAGCGGCAAGGgctccgtgccgccgcggttcccgcaccacgccctggccggcgtgctgggGCTGGCGCCCCTGGGCTCGCTgggccacgccctggcccaggcgcaagcccaggcccaggcccgcgAGGGAGTGGGCCCCCAGCGGAGCGAgtcgccgcagccccgcgacgccccgtcaCCCGCCATGGACGTCGAGGAGGACCAGGTGGAGGACCTGTCCGTCGCCAGGACCACGTCGTCGTCCGAGGAGAtgtccccgccgggcccggccgcccacgccTCTCGCGTCATCGTGAgcatgcaggccgcgcgccaagAGGAGGAGCGGGAACGGGAacgggagcgagagcgagaacgggagcgggagagagagagggacctGGATCGGGGGCTGGAGATACGGGGGCCTATCATCGGCATGGAGGAGACCCGTGGCAGCCCCATGGAAGTCGGCGGTGAGCGGGATTGA
- Protein Sequence
- MMANSGQQYCLRWNNHRSNLLTVFDQLLQSEAFTDVTLACEGGVSIKCHKMVLAACSGYFAALFAELPCKHPVVVLKDVKYSDMKAILEYMYRGEVNVEQQQLTALIRVAETLKVKGLVEENGHHSSCSAEDYKDKHHNNNTISNPKEEMTPSSAPSPPSSITTSTGLGASSPPHSTYKYPFKGSPSSDRERDRERERARLSLPLWGLPGVALPGVPAAQSSLLAAAYESGDMSPLHRKKLSSLLLHSRDTPILRTVLGQAQGAEGGAAGNGQGAASSRGSAAGASAGAAQGQADSSQPVSLVCHPDSHDARPGSHAHSNGYMYDFEKIKQEGNEGSPSPYTDTSMTEEDLERSRMMIPSSSPLSAADMRGVSSNIVPYVQQQKPEWKRYKQYTRNDIESAIEAVKTGMSALQAARKFGVPSRTLYDKVKKRGIVTNRPIKRASNGGASSAGNGNGGGSNSGGPSTANGVAFPFGISGAPQWMGHNLEEGDNATAPNVGAALSASGLVEHWMDKAEMEREAIAAMASAQAAQAAHALSINSGNSNSPPEDRDSRHGDRHGDRQGSEGARSPSPSPSGKGSVPPRFPHHALAGVLGLAPLGSLGHALAQAQAQAQAREGVGPQRSESPQPRDAPSPAMDVEEDQVEDLSVARTTSSSEEMSPPGPAAHASRVIVSMQAARQEEERERERERERERERERERDLDRGLEIRGPIIGMEETRGSPMEVGGERD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01435105;
- 90% Identity
- iTF_01435105;
- 80% Identity
- iTF_01435105;