Tpal008128.1
Basic Information
- Insect
- Thrips palmi
- Gene Symbol
- lola
- Assembly
- GCA_012932325.1
- Location
- NW:3312231-3317903[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.9e-08 4.5e-05 22.7 0.0 1 40 258 297 258 300 0.93 2 4 8.1e-11 1.3e-07 30.9 0.1 3 39 310 345 308 349 0.92 3 4 0.00054 0.85 9.1 0.0 6 39 366 398 365 403 0.84 4 4 4.3e-14 6.8e-11 41.4 0.0 3 42 423 462 421 464 0.92
Sequence Information
- Coding Sequence
- ATGAATTTTGTCATGGATACGATTGAAAGTGACACGGTTAAGCCTGATAACTTTTGTTTAAAGTGGAGTGATTACCAGTCTCACGTGTTAAGTGTGTTAGTTCAACTTCTAGAAGCGGAATCCATGGTCGATGTTACATTGTGTACCTCCAATGGATACAAGCTCCATGCGCATAAAATTGTTCTATGTGCTGCTAGTCCTTACTTTGAGGGGATTTTCTCCGATTCAGCAGAAAGCCACCCAATTTTGATCCTTAGTGAAGTGAACCCAGAAGCACTTCGATGCATCCTGGATTTTGTTTACCATGGAGAACTTAATGTACAAGCAGCACAGCTGACAGAAGTTCTTCAAGTGGCAGCTGCTTTACAAATTCGAGGATTAATGGAGGTGTGTGATCAACTTCCTCAACTCGTGCCGTCTCAAGATGAAGATTTCACCGATTCTAGCAAGAATTCACTTCCCAATACGTGCTCAAAAACTATGACAGAAGCTCCATATTCTTCGGGCACAGATGCACAAACAACTTCAGATTTTGACTATGAAAACACTGCATCTATCCAAGAGGAGAGGGAAGAACATTGTGTTGAACAGGCACAAAatggaaagaaacaaaaaacacagGACAGTTGTTCAACAAATAACAGCACTCTCAAAGAAAACTCTAATAATGATTGTCAAAACTGGTCGATTGATACTGATGCTTCATTTGAAAATGATCAGATTCAGGAGCACAAAAGAAGAAGACGCAGGGAAAGTTGTAGGAAGGAGTACAGTGAGGAACAGCTTGCCGCTGCTTTAAAGGACTTAAAGTCGGGTCAACTTCTACGAGAGACTGCAACCATTCACAATATTCCACGATCTACTTTATATGTTCGGGCTAAAGCAGAGGGAATTCCAATCACAGTCACAAGACAAGAACACTCTGGAGAAAATGTGAATGCTGCAGTTGAGGCAGTGAACAGAGGAGCTAGCTTTCATCAAGCATCAGAAATGTATCAAATACCAAAAACAGTTTTGTGGCGACGAGTTCGTGCTGCAGGTGGGAGTACTGGACGGATGTGCTCTAAACGACAAAGTTATGGACCTTCACATTGGCAAGCAGCTGTTCAGGCTCTTCAAGATGGCCAAAATCTATCTAAAGTTTCTGCTGAGTTCCATATTCCAAAAACAACTCTTttcagagagaaagagcgccTTGTACAGGCTGGAAAACTGCCCTGGACTAGTCTTAAAAAAAGAGACCCTCAACTTCATTCAACCAAAAATTCAAGGCTAAAAGAAGCTGTAGCTGCATGCCAAGAAGGTAAAATGTCACAAACAGTGGCATCCATAACTTATCAGGTTCCTAAGACTACTATTTGGAGAAGGTTGCAGAGAGGATTATCACAAAACTCTGATGACCCAGTTAAAACTGTAAGATCAGTTGAAGTCAGTAATGCAGTTGTGAATAATGCTTGTGACACACTTCCAGAACAAGCACAGTATTCTTTTATTGAGAGCAACAATCATCTGCCTGTTACGTACATTGTTGAAGAAGACTTTTCCTCTGCATCCCTGATAATTTAA
- Protein Sequence
- MNFVMDTIESDTVKPDNFCLKWSDYQSHVLSVLVQLLEAESMVDVTLCTSNGYKLHAHKIVLCAASPYFEGIFSDSAESHPILILSEVNPEALRCILDFVYHGELNVQAAQLTEVLQVAAALQIRGLMEVCDQLPQLVPSQDEDFTDSSKNSLPNTCSKTMTEAPYSSGTDAQTTSDFDYENTASIQEEREEHCVEQAQNGKKQKTQDSCSTNNSTLKENSNNDCQNWSIDTDASFENDQIQEHKRRRRRESCRKEYSEEQLAAALKDLKSGQLLRETATIHNIPRSTLYVRAKAEGIPITVTRQEHSGENVNAAVEAVNRGASFHQASEMYQIPKTVLWRRVRAAGGSTGRMCSKRQSYGPSHWQAAVQALQDGQNLSKVSAEFHIPKTTLFREKERLVQAGKLPWTSLKKRDPQLHSTKNSRLKEAVAACQEGKMSQTVASITYQVPKTTIWRRLQRGLSQNSDDPVKTVRSVEVSNAVVNNACDTLPEQAQYSFIESNNHLPVTYIVEEDFSSASLII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01435122;
- 90% Identity
- iTF_01435122;
- 80% Identity
- iTF_01435122;