Tpal010817.1
Basic Information
- Insect
- Thrips palmi
- Gene Symbol
- bab2_1
- Assembly
- GCA_012932325.1
- Location
- NW:13066543-13076009[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.8e-11 2.7e-08 33.0 0.0 1 39 496 535 496 539 0.90 2 4 6.2e-14 9.7e-11 40.9 0.1 1 39 550 588 550 591 0.94 3 4 8.6e-19 1.3e-15 56.4 0.0 2 45 606 650 605 650 0.97 4 4 1e-19 1.6e-16 59.4 0.0 1 43 657 700 657 701 0.97
Sequence Information
- Coding Sequence
- ATGTGCGGGCCAGCAGTTGATATCACTGCAGCCATGGCTGGGCAACACTATTGCTTGCGGTGGAATAATTATCAATCTAACATGACATCAGTATTTCATCAGTTGCTCCAAACAGAGGCCTTTGTTGATGTGACACTTTCATGCAATGAAGCATCGCTTAAGGCACACAAGGTGGTGTTATCGGCATGTTCCTCATATTTCCAAAAGCTGCTCCTAGAAAATCCTTGCAAACACCCAACAATCATCATGCCTCCCGATGTCTGCTTTAATGACCTTAAGTTCATCATTGAATTTGTTTATCGAGGAGAGATAGATGTTTCTCAGGCTGAGCTTCAGAGTCTTCTCAAGACAGCAGACCAGTTAAAGATAAAAGGTCTGTGCGAACTTCCTGAAGGTAGGGAGGGAGGAGTTGGAATTTCGTCTGCAGAAGTAACACCACTTCCACCTAATGTCAGAAGACGAAACATCACTAAGTTTCGACGCTTTGCTGGCAACAAAGGACGGAGATTTGAGCCTCATAGAGGGCGTCCACCTTTATTCCGAGGTGCTGCTACTGTGAAGCAAGAACAGCCCCAACAGTCTCctcaacaacatcaacaacagcaccaccagcaacagcatcaacagcaacaacaagtacttcaacagcaacagcaaatGCAGCATGCACAGCATCAGCAGCATCAAATGCAGCATCAAACACACCTCCAGCAAGGGGCTGGCATAGCTGAGCCAATGCGACACATACAGGTTGCAAATGGCATGGCTGTCAATGTTGGAATGACTGTTGCCACCTCAACTGATGAAGAGCACAGCAGTGGTGGGCACCTTTCTGCTGGTGATATTCCTGTTGTCATTTTAGAAAGCCGGCCTCACTCCCATGGACATGCTGGTCAACCACAAATGCATCCCCACCTCCAACATCATCAACTTACTACTGCAGTGTCTCCAGTCCTGTTATCTCACCAAGGTCACCTACCTCATGGCTTAAGCCTTCCACCTCCACAACCGCAGCAAATGGAGCAGCACAATTCACATTCTGTTCATTCCGGTCACTCAGCACACTCTGCCCACAGCAACAGTGCAAGTGATGTTGAAATGCCTCCAGAAGTCACACCACCTGCCCCCTCAGCAACCCCTGTACCCCTTATGGCTATTCATGAGGAGTCTATACCCAGAAGCCGAGACATGGCAGTGGATACGTCTGGAATAACTCACACAACGGAAGATGAAAATGTGAAGGTGAAGTTTGAAACTTTACGTGCTATGGAACAAGGGGATACTTTAAACATGGACAGTCACATGACTGACAGACAGCCTCAAAATATGGGTGATGAGGATCACACCATGCACACTATGATGATTACTCCAGAACTCCTTGGGTTGATACCATCGTCCTCTGGACATTCAACTGATTCAACAGccccctccccagcAGATGTTACACCAGAAACACCCAAGGGTCCTGGGGGACCGAAAACATGGACACAGGAGGATATGGATGCTGCTCTAGATGCTCTTCGTACTCAGAATATTTCTTTAACAAAGGCAGCTACCATGTTCAACATTCCTTCAACCACACTCTGGCAAAGAGCTCATCGCCTAGGCATTGATACTCCAAAGAAAGAGGGGCCTAACAAATCGTGGTCTGAAGATAACTTAAATAATGCTCTTGAAGCTTTACGAAGTGGATCCATTTCTGCCAACAAAGCAAGCAAGGCATATGGTATACCTAGCAGCACACTTTATAAAATAGCAAGAAGAGAGGGCATTAGATTAGCAGCCCCGTTTAATGCTGCTCCCACTACTTGGAACCCAGATGACCTAGAAAGAGCTCTAGAATCAATCCGATCGGGACAAACGTCTGTCCAACGGGCTGCTGCAGAGTTTGGCATTCCAACCGGCACTCTATATGGTAGATGCAAGCGTGAAGGTATTGAGTTGTCAAGAAGCACACCAACTCCTTGGTCTGAAGATGCCATGTTGGAAGCTCTTGAATCTGTTAGGGTGGGTCAAATGAGCATTAATCAAGCAGCTATTCACTACAACCTACCATATTCATCTCTTTATGGGCGATTTAAGAGAGGAAAGTATGAAGCAGATCATCCAAGTGGCGATGAGTCTATGGACGCTCCTGTGTCTCCCAACATTCAACCTCAAATAATGGTGTTGCCATATTCAGTTAGTGTAACGCAGCACTCACAACAGCAGCATCAGCAGACAGCTCAACAGCAAGCTCAAGCTGCTgcagcccagcagcaggctcagcagcaggcagcacagGCACAGCAAGCAcagcagcaggcgcagcaAGCTGCTGCAGCCCAGCAGGCAGCACAGCAACAAGCCCAGCAGGCAGCTCAGCAACAAGCCCAACAGGCCGCACAGCAACAAGCCCAACAGGCCGCAgcccagcaggcagcagctCAGCAAGCAGCAGCCCAGCAAGCAgcccagcaggcagcagcccaGCAAGCTGCACAGCAACAAGCACAACAGGTGGCAGCCCAGCAAgcccagcaacagcagcagcagcagcagcaagctgCAGCCCAGCAAGCACAAGCCGCTGCACATCAGATCCACCAACAGCAACAAGCTGCTGCACAGGCTGCCCAAGCTGCACAGGCTCAGCATTCAATGGCTCAGTATCAGTCACATAGCACCAGTTGA
- Protein Sequence
- MCGPAVDITAAMAGQHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLSCNEASLKAHKVVLSACSSYFQKLLLENPCKHPTIIMPPDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCELPEGREGGVGISSAEVTPLPPNVRRRNITKFRRFAGNKGRRFEPHRGRPPLFRGAATVKQEQPQQSPQQHQQQHHQQQHQQQQQVLQQQQQMQHAQHQQHQMQHQTHLQQGAGIAEPMRHIQVANGMAVNVGMTVATSTDEEHSSGGHLSAGDIPVVILESRPHSHGHAGQPQMHPHLQHHQLTTAVSPVLLSHQGHLPHGLSLPPPQPQQMEQHNSHSVHSGHSAHSAHSNSASDVEMPPEVTPPAPSATPVPLMAIHEESIPRSRDMAVDTSGITHTTEDENVKVKFETLRAMEQGDTLNMDSHMTDRQPQNMGDEDHTMHTMMITPELLGLIPSSSGHSTDSTAPSPADVTPETPKGPGGPKTWTQEDMDAALDALRTQNISLTKAATMFNIPSTTLWQRAHRLGIDTPKKEGPNKSWSEDNLNNALEALRSGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWNPDDLERALESIRSGQTSVQRAAAEFGIPTGTLYGRCKREGIELSRSTPTPWSEDAMLEALESVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYEADHPSGDESMDAPVSPNIQPQIMVLPYSVSVTQHSQQQHQQTAQQQAQAAAAQQQAQQQAAQAQQAQQQAQQAAAAQQAAQQQAQQAAQQQAQQAAQQQAQQAAAQQAAAQQAAAQQAAQQAAAQQAAQQQAQQVAAQQAQQQQQQQQQAAAQQAQAAAHQIHQQQQAAAQAAQAAQAQHSMAQYQSHSTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00733267;
- 90% Identity
- iTF_00733267;
- 80% Identity
- iTF_01435125;