Ttri016267.1
Basic Information
- Insect
- Therioaphis trifolii
- Gene Symbol
- Hivep2
- Assembly
- GCA_027580255.1
- Location
- CM050408.1:34772149-34777174[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00039 0.058 15.2 0.4 2 23 28 50 27 50 0.97 2 11 0.089 13 7.8 0.5 1 23 167 190 167 190 0.92 3 11 0.0014 0.21 13.4 0.6 1 23 198 220 198 220 0.97 4 11 0.00014 0.021 16.5 3.3 1 23 226 249 226 249 0.98 5 11 0.017 2.5 10.0 2.9 1 23 496 519 496 519 0.95 6 11 0.0026 0.38 12.6 0.5 3 23 699 719 698 719 0.98 7 11 2.5e-05 0.0037 18.9 3.1 1 23 725 748 725 748 0.97 8 11 0.003 0.44 12.4 1.7 1 23 778 802 778 802 0.96 9 11 0.077 11 8.0 0.4 1 23 879 902 879 902 0.97 10 11 0.00092 0.14 14.0 2.2 3 23 936 956 935 956 0.97 11 11 0.029 4.4 9.3 3.6 1 23 962 985 962 985 0.95
Sequence Information
- Coding Sequence
- ATGTCATCAGAAATGTTGCGTGTAGACAATTTGCGACAGCGGCTGTTTTGTAATTCCGTGTTGGACACCAAAAGAGAAAGTCGGTGCCCCGTGTGTAACGCCATGTTTTCGACCACGTACAGCATGCGTCTGCATTTGCAGACCGTCCACATGGACTTGGAACCTCAAAATTTGTCCGCCAAAACGTTTTACCGCGAATTCAACAATAACAATAATATCAACAACAATAACAACAATAACAATAATAACAATAACACTATGAAATCACCCGTGAAAACGTTCAACAGTCCAGAACGTATGCACGTGACACCCGTCAAGTCTTTGTACAACGGGGATTCGACATGCAGTACCGACTTTAGTGACGGATACCCGTCGGACAAAGACTCGTACTTTGGCAATTCACCCAAAGACGAAATCCCCCTGTCCGTCACTGGCAACGGGAGTTTTGTCTCGCATTCGCCGGCCAAGCGGAGCAATCACATGAAAACCAAACGCACGTACACTTGCAGGCTGTGCTCCACCGTGTTCGGCAATCTGAGAGCGCTGAAGGGTCATAATTCGTCCAGCCACAACAAGTCCACCAACGGGCTGTACGCGTGCAACATATGCGAGTTCGCGAGCACCGAGAAGGCGTCGCTGAACCACCACATGAAGGGCCACACGGGTGAAACGCCGTACGTGTGCAAAAAGTGTTCGTACGCGTTCACCACGAAAGCCAACTGCGAACGACACCTGCGGACCATTCACAAGGCGTCCAACGCCGAGGTGAAGACGTCGATATTGTTCAAGAATGAGGAGAAATCGGCGCTGTCTACCGGTGACGAGACGGCGGCCGCCGACAAGCGGGAAGAATACCATCACAGAACGATGGACTATTCGCAATACGAGTCGCCCGGGCAGAAGAGCTCGGAGGACGACGAAGACGAGTGCGACGAACCGTTGGATCTGAGCGTGAAACGGTTCAAGTCGGGCTTAGACTGCGAGCCGCAAGACCTGTCGATCAACAGCAACAAGTCGTCGTCCGCCACGGACAACTGCACCGATGAGGAAGATCTCAAACCGGCCACGGCGTTCCGCGAGCAGTTCGTGCCGCATGCTCCACCCAGCTACATGGACCTCACGATACCGACGCCGCTGCACGCGTATTTCCTGAACGAGCACCGCATGTTCTTCAACGGCATGTACCCCAACGCGGAACGCATGCTGCCCATCCCGCTCACCGTGGACATGATCCGCGCCATGCGACAGATGAACGAGCCGCCTCCGGTCCAAGAGCCGCCCGACCTGCCGCCCAAGCCCAAAACACCGGAGCCCGTGTCAGTTTCCACCGCCGCAGCCGCCACCGCCGCTGCGGTCGTCCCGTCGTCCGCTCCGCTGGCGCAAATGGACGCGGCGCAAAAACCCAAAGACGTGAACGGGTTGCGGTTGGTGATGAAAAACGGCATTCTCGTGCCCAAACAGAGACGGTTCAGGACGGACAGACCGCACGTGTGCGAAACGTGCAAACGGGCGTTCACGTTGAAGTCGAACCGCGACCGGCACGTGAAAAATCAACACCCCACCGACTGGCACAAGAAGCCCAGGTCTTTGTCCAAGTCCGAACCGCAGTACTCGGCCGTCAAGCAAGAACATGACCTGGCGCCGATATCGGATCAAGTGAAAATGGCCTTGTCGCTGAAATGCCGACAGCCGGAGCCACAGCAACGGACCGAGGACGAAGTGGACGACGAAGACGAAGAGGACGACGTGGTGGAGGAAGACAAATTGGTCATAGTGGAAGACAGTGGAGACAACAACAACAAACCGGTTGAAGTCAAAGAGGAGTCGGCCGACTTGGCCAGCGTGTCCAGACTGCTGGACAACGCTTCGCACCAGACATTCCCGCAGTTCACCAGGTCCGACGAGGACCACAATGAGGCCACCAGCAGCGAAGAAGAACACAGCGAGGGCGCGAGCTATTCCGAAAACGACGGTTCCGGCACTAACGCCGGCAACAACAACAACGTGGACATAAACTTCAACAGCGACAAAGACGAGGGACGGGAGAAACGGAAGAAAGTGAGCGCGTACGCGGCCGCGCCCAACAGGGTGCTGTGCCCGTTCTGTTACCTGTCGTTCCCGTGGACGTCGTCGCTGAAACGTCACATCCGCACGCACACGGGCGAAAAGCCGTACCAGTGCAAACACTGTCCGCTGTCGTTCTCGACCAAATCGAACCGCGACCGGCACATCCTGCGCCTGCACTGTACGCCGCCCAGCAAGTCGGCGCCGTCGTCGGACAGCGAGACGACCGCTGCCGCGACCGCGGCCACGGGCGACGCGAAGAACGTGTACAAGTGCACGTCCTGTCCGAAGACGACGTTCTCCAAACGCAAGAACCTCATCAGTCACATAAACCGGGTGCACTTTGACAAGAGTAGCGGTGGCTACGGCAGCGGCGGCGTGGGGGATGACGATGAACGAGGCGACGGTTCTGACGACGGTGGCGAGTCCGAACGTGACTATCCGACTTCGGCGGCGACTGCTGCATCGACGGCGGCTGCGTGCGCGGTCGGAGGATTCGGGACCTACAACAACGGCGGCACGTCGTCCAACGTGGTCGGCGCCGCGTCCGCGACCGGGTCCGAGCCGTGTTTCAAGTGTCATCTGTGCGATAGCAGCTACCCGGAGAGGCAGGCGGCCCTGGACCACATCCGCATCAATCACTCGGAGTGTTACGAGATACTCGTGTCGCAGGGGGCTATGGACAACGACCACGACGCTTCGGCCGTCAAACAGGATGACGTTGAGAACAGAAAGGTTCTGTGCGCCTTCTGCTTGCACCGTTTCTACTCGGCCGAGGACCTGCGCCGGCACATGCGCACGCACACTAAAGAACAGCCGTTCGCGTGCCAGTCGTGCAAGCGCCGCTTCACGCTCAAGCACAGCATGGTCCGGCACATAGCCAAAAAGCACGGTGGCGGACACGACCAGCTGCAGTACGGTGCGTCCGGCAGCGACCTGGAACACCTTCACCACCATCACCAGAGGTCCCGGAGCTCGAGCCCGCAGGCCGCGTCGTCGTCGGCGTACGAAGAGTGTGGCGGTGGCGGCGGTCGGGCGACGGACACGGGCCTCATCGGCACGCTGCTCGGCATCCGCGACAACACGGTCATCGACCAGGTGCTGCAGACCAAGTCCCCCGAGGACGCGGCCAAAATGCTGGGAATCAAAAGCAGCGCGTAA
- Protein Sequence
- MSSEMLRVDNLRQRLFCNSVLDTKRESRCPVCNAMFSTTYSMRLHLQTVHMDLEPQNLSAKTFYREFNNNNNINNNNNNNNNNNNTMKSPVKTFNSPERMHVTPVKSLYNGDSTCSTDFSDGYPSDKDSYFGNSPKDEIPLSVTGNGSFVSHSPAKRSNHMKTKRTYTCRLCSTVFGNLRALKGHNSSSHNKSTNGLYACNICEFASTEKASLNHHMKGHTGETPYVCKKCSYAFTTKANCERHLRTIHKASNAEVKTSILFKNEEKSALSTGDETAAADKREEYHHRTMDYSQYESPGQKSSEDDEDECDEPLDLSVKRFKSGLDCEPQDLSINSNKSSSATDNCTDEEDLKPATAFREQFVPHAPPSYMDLTIPTPLHAYFLNEHRMFFNGMYPNAERMLPIPLTVDMIRAMRQMNEPPPVQEPPDLPPKPKTPEPVSVSTAAAATAAAVVPSSAPLAQMDAAQKPKDVNGLRLVMKNGILVPKQRRFRTDRPHVCETCKRAFTLKSNRDRHVKNQHPTDWHKKPRSLSKSEPQYSAVKQEHDLAPISDQVKMALSLKCRQPEPQQRTEDEVDDEDEEDDVVEEDKLVIVEDSGDNNNKPVEVKEESADLASVSRLLDNASHQTFPQFTRSDEDHNEATSSEEEHSEGASYSENDGSGTNAGNNNNVDINFNSDKDEGREKRKKVSAYAAAPNRVLCPFCYLSFPWTSSLKRHIRTHTGEKPYQCKHCPLSFSTKSNRDRHILRLHCTPPSKSAPSSDSETTAAATAATGDAKNVYKCTSCPKTTFSKRKNLISHINRVHFDKSSGGYGSGGVGDDDERGDGSDDGGESERDYPTSAATAASTAAACAVGGFGTYNNGGTSSNVVGAASATGSEPCFKCHLCDSSYPERQAALDHIRINHSECYEILVSQGAMDNDHDASAVKQDDVENRKVLCAFCLHRFYSAEDLRRHMRTHTKEQPFACQSCKRRFTLKHSMVRHIAKKHGGGHDQLQYGASGSDLEHLHHHHQRSRSSSPQAASSSAYEECGGGGGRATDTGLIGTLLGIRDNTVIDQVLQTKSPEDAAKMLGIKSSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -