Ttri027414.1
Basic Information
- Insect
- Therioaphis trifolii
- Gene Symbol
- -
- Assembly
- GCA_027580255.1
- Location
- CM050407.1:7572280-7575802[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00096 0.14 13.9 0.1 1 22 165 186 165 186 0.90 2 12 4e-05 0.0059 18.3 3.1 1 23 303 325 303 325 0.98 3 12 6.8e-05 0.01 17.6 1.7 2 23 332 354 331 354 0.96 4 12 0.0048 0.71 11.8 1.7 1 23 360 383 360 383 0.96 5 12 0.00016 0.024 16.4 3.8 1 23 414 436 414 436 0.98 6 12 0.19 28 6.7 5.4 1 23 442 464 442 464 0.97 7 12 0.019 2.7 9.9 0.1 1 20 470 489 470 491 0.96 8 12 0.0003 0.045 15.5 2.0 1 23 495 517 495 517 0.98 9 12 2.1e-05 0.0031 19.2 6.7 1 23 552 574 552 580 0.97 10 12 0.16 24 7.0 7.3 1 22 604 625 604 629 0.96 11 12 0.00087 0.13 14.1 5.9 1 23 649 671 649 671 0.98 12 12 0.01 1.5 10.7 0.4 1 23 695 718 695 718 0.95
Sequence Information
- Coding Sequence
- ATGTTCAGTTCGATTAATGACAAAGTTAACACCCCAAAACAGCAAAAAATAGATTCAGATGATAATAAATCTGATATTGAAAATAACTTTGATAATGAATTACCAGTATCGTCCATAATAACTATTAACGGCACCAACAATATCACCATTTGTAAAGAAATTAATTTGGACGATATTCATTCTGACATTGATAACTTTTCAGATAATGAATTACCTATTTCTTCAATAATAACGATTGATGATAATATTACTTCCACCAAACTACAAAAATTTGATTTGGATGATATTAAATCCGACATTGAATATTATTCAGATAATGAGTTACCCATTTCATCTATAGCAAATGTATTGCTTCCAAATGATAGCCATAAAATTGAAAAAGTTCATATACCTAAGTTATTAGATAACCAAACAAAGCTAAATGATTACAATTATGAAATCAGTGTAATATCTAATAGCAAAGAAAGTAAACTAAATAACTCAACAAGCAGCTATGAATGTGATATTTGTGGTAAAGTATTTCCTAAACGTAATCTGATAGTTGAACATTTTAGAACTACTTTATGCTTTCCAGAAATTCCTTCATTTTTAATTAACAACAATAGTTCTAATCATCATTTGTGCAAGAACTCTAAAAATATTATGTTGCATTTGAATACTACAAATAATTTAGCTACTAATAATTTAAAAACAACTCACAGGTATAAAAATCATAAATTAATAAAAAATTGTCAAATATCACATACCAAAAAAAATAATTTGAAATATAATATTGATTCAAGATTAAATAAGATCACTTACCAAAATCACAGATACGTTCAAACAAAAAATAAATTTAAGTGTGATAAATACAATAAATTATATTTACAGTTGAATGGTTTAGAAAAACCCAATATAATACATTTATTCAGTTGCTACATATGTCATGAAAGGTTTTCTAAGCGATCATCATTAAAAGCACATGAAAAAATCCATGATTTAAAAAGTGTTAATCAATGCAATATTTGTCAGAAATATTTTAAATCAAAATCAAGTGTGTCCAAACATATTAGTAGAATACATAATTTAACTCAAGAGTATGAATGTTCAAGATGTTCAAAGGTATTTTATAAGCGTTATGAAATTGTTAATCATATTTTTAAAAATCACCAAGAAGACTATTCTAAATATAGTTGTGAATCATGTTCAAAATTATACGAATTTTCAAATAACTCTATTTATTCTTTAAAAAAATTGTTTTATAAGTGTGATGTATGTTCGCGGTCATTTACTACATCTCATAGACTTGACCAACATTACAGATGGCATCTTAATATAAATGATTTTAACTGTAAACACTGCTCTCAACAATTTTCCAAATTTTCAGTTTACTTATCCCATGAAAAAACACATGTCGGAGAAAAACCATTTCGATGTAATTTTTGTGGTAAATGGTTTCCAGTTTCATCAAATATAAATATTCATATAGGATATAACAATTTATTTGTGTGCAAGTTTTGTGAAAAAATATTTTCTCATATGTCATTGTTATTATCTCATGAAAAGATTCATTTACAAAAAGAACAATCCAAAAGTAAGAGTTTTGATAAATTATTTAATCAGTTATCCAGTTTGAGACTACATAAACAACAAAGATATATGAACAGAAAACAATACAAGTGCAACAAATGTAATACAACTTTCAAACAGCTATCAACATTTAGATCACATTTACAAACTCATCATTTAACTAAACATATTTACGGAAATGATAAATGTAGCAATATAGAAACAGAATCATCTTTAATCAAACACATAAATAATGGATGTTTTAAGTGTGAATTATGTCATGAAATATTTTTTGACCAAAAAACGTTTACTACTCATAGATGCACTTCATGTACAAAAAGTCCTACATCTTCATTTAAAAACAATCATGGAAAAATTCTTAAAAATAATAAGCTTTTTAAGTGTGATGTATGTTTTACATCATTCATGCATTCAACCAGTCTCAATAGACATAAAAAAAAACATATAGAGTTTGAAAAAAATGTGTCTCGTAATAATTACAAAACAAACACAGATAATTTTGTACATAAAGATTATACATGTGATCTTTGTATGGAAGTGTTTAGTAACCAAACTGAAATTTGTGCTCATATTCTTGAAAATCATTATTAA
- Protein Sequence
- MFSSINDKVNTPKQQKIDSDDNKSDIENNFDNELPVSSIITINGTNNITICKEINLDDIHSDIDNFSDNELPISSIITIDDNITSTKLQKFDLDDIKSDIEYYSDNELPISSIANVLLPNDSHKIEKVHIPKLLDNQTKLNDYNYEISVISNSKESKLNNSTSSYECDICGKVFPKRNLIVEHFRTTLCFPEIPSFLINNNSSNHHLCKNSKNIMLHLNTTNNLATNNLKTTHRYKNHKLIKNCQISHTKKNNLKYNIDSRLNKITYQNHRYVQTKNKFKCDKYNKLYLQLNGLEKPNIIHLFSCYICHERFSKRSSLKAHEKIHDLKSVNQCNICQKYFKSKSSVSKHISRIHNLTQEYECSRCSKVFYKRYEIVNHIFKNHQEDYSKYSCESCSKLYEFSNNSIYSLKKLFYKCDVCSRSFTTSHRLDQHYRWHLNINDFNCKHCSQQFSKFSVYLSHEKTHVGEKPFRCNFCGKWFPVSSNINIHIGYNNLFVCKFCEKIFSHMSLLLSHEKIHLQKEQSKSKSFDKLFNQLSSLRLHKQQRYMNRKQYKCNKCNTTFKQLSTFRSHLQTHHLTKHIYGNDKCSNIETESSLIKHINNGCFKCELCHEIFFDQKTFTTHRCTSCTKSPTSSFKNNHGKILKNNKLFKCDVCFTSFMHSTSLNRHKKKHIEFEKNVSRNNYKTNTDNFVHKDYTCDLCMEVFSNQTEICAHILENHY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -