Ttri014559.1
Basic Information
- Insect
- Therioaphis trifolii
- Gene Symbol
- -
- Assembly
- GCA_027580255.1
- Location
- CM050408.1:8348586-8350627[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00082 0.12 14.2 3.5 3 23 155 175 154 175 0.98 2 10 0.00026 0.039 15.7 4.0 1 23 181 203 181 203 0.96 3 10 3.9e-05 0.0057 18.3 4.9 1 23 209 231 209 231 0.99 4 10 9.5e-06 0.0014 20.3 3.5 1 23 237 259 237 259 0.97 5 10 1.9e-05 0.0027 19.3 1.4 1 23 265 287 265 287 0.97 6 10 0.00041 0.061 15.1 0.1 1 23 293 315 293 315 0.98 7 10 0.096 14 7.7 0.1 3 21 322 340 321 341 0.93 8 10 0.00032 0.047 15.5 0.0 3 23 363 383 362 383 0.97 9 10 0.00012 0.018 16.8 2.2 1 21 433 453 433 454 0.93 10 10 3.2e-05 0.0048 18.6 2.6 1 23 465 487 465 487 0.97
Sequence Information
- Coding Sequence
- ATGTTAAAAAGGTACAATGGCAGTCTTCAGCCAATAAGATTGGTGACAGACCATCTGACCGAACGGCTGAATCTCGACGGTGCATGCGTTTTTCCAGTAGCTAATTCAGGTGTTGAACCAAGACCTAAGCATAAGAAAAAGAGGAGCCGGTCATCGACTGGAAAAAGTATTCGGCTTGGGGCCAAAAATAATAACCAGAATGACGTGACAACGATGAGCAACAATCTCATGTTTCGAAGCATGTTTTTTATGAACGAAGAAGCTAGACATTTCTTGGCGCCGCCTATACAATTGTCTACAACTGATGGAGAATATTTTCGCAAAACAGGCAATCCAAATTTGAATACACATCATCAACAACAACAGCAGCAGCAACAAGCTGTTGCAGCACTTGTAAATCACGACTCGAGTTCTAGTGTCGATAACAAAGCATTACAACCTCCTAAAGCCCGCCCACACGGCTGTGAAGAGTGTGGAAAAACGTTTCTCATGAAACATCATCTATCTACTCATATGCGAGGTCATACTGGTGAACGACCTCATATTTGTCCCGAATGTGGCAAGACCTTTGCACTCAAACATTGTTTAAGTACACATTTGCTTTTGCATAGTTCCGAACGACCTTATAAGTGTTTAGAATGCAATAAAAGTTTCACTTTAAAACATCATTTGGTAAGTCATGAAAGAGTACACACTCGAGATAGACCCTTTGAGTGCCCTGAATGTCGCCGTCGATTTCCTCAAAAACGTCACTTGACAACACATATAAAATTCCATTCTGGACAACGGCCATACTCATGTTCTGTTTGCGGTGAGACATTTTCACGTGAAGAACATCTAGTAATGCATTCAAGATTCCATGGCGGAACACAACCATTTGTCTGTCCAGATTGTGGAGCTGCATTTTTGCGTAAATTTGAATTGGTAAACCATGAAAGACAGCATGGTCGTATACCTGAATCTTGTCCTGCTTGTGGCAAAGAGTTTTTACAGAGACGCACATTATTGGTCCATGTAAGAAATTGTGGTCTCAATTCATCAACACCCGTACATAGATCTCCTTATACTGCCACAGCGAGTAAAGCTTGCCGTGAATGTGGTGAAACGTTTGCTAGCGATGAAGGTCTTGCACTTCACATGCGATTACATATTGGTGACCATAGTTTCCTATCTGACATTTGTAGTCTAGCTGCTACTTTGAAACAAAGCGTACAAGGTGTATCAAATGGAATTGCCAACGTTCAAAATCATCACCAATCACAACAACAATCTGGTGTTTTAGCCAATAAGAAATCTCATTACTGTGGAGATTGTGGTCGTGGTTTCACCCAGAAACATGGCTTACAACAACATCACATCAAATACCCAAATGCCACGTGCAAAGACAAACCATTTGCATGTCAAAAATGCGGTAAAAGTTTCATGCAAAAAAATCATCTTGTATTACACGAACGTCAACATATGGATCCTCCTCCTTCAAGAAACCGTAATGCTACTACCTCAGCTGTCCAATCAATACAACATAATATACAGTCTGAACAAGTTGGATTACAACCTCCTCCTCTACATCCAACTATTTTGGGACTACAGCCTATTAGGCATATTCAATCTGGTAGTCAGCCTCAACTATTAAGACACCCAAGCGATGCCCATTCAGGGTCTTAA
- Protein Sequence
- MLKRYNGSLQPIRLVTDHLTERLNLDGACVFPVANSGVEPRPKHKKKRSRSSTGKSIRLGAKNNNQNDVTTMSNNLMFRSMFFMNEEARHFLAPPIQLSTTDGEYFRKTGNPNLNTHHQQQQQQQQAVAALVNHDSSSSVDNKALQPPKARPHGCEECGKTFLMKHHLSTHMRGHTGERPHICPECGKTFALKHCLSTHLLLHSSERPYKCLECNKSFTLKHHLVSHERVHTRDRPFECPECRRRFPQKRHLTTHIKFHSGQRPYSCSVCGETFSREEHLVMHSRFHGGTQPFVCPDCGAAFLRKFELVNHERQHGRIPESCPACGKEFLQRRTLLVHVRNCGLNSSTPVHRSPYTATASKACRECGETFASDEGLALHMRLHIGDHSFLSDICSLAATLKQSVQGVSNGIANVQNHHQSQQQSGVLANKKSHYCGDCGRGFTQKHGLQQHHIKYPNATCKDKPFACQKCGKSFMQKNHLVLHERQHMDPPPSRNRNATTSAVQSIQHNIQSEQVGLQPPPLHPTILGLQPIRHIQSGSQPQLLRHPSDAHSGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01305888;
- 90% Identity
- iTF_01305888;
- 80% Identity
- -