Basic Information

Insect: Therioaphis trifolii
Gene Symbol: -
Assembly: GCA_027580255.1
Location: CM050405.1:41480110-41483148[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0064 0.95 11.4 2.6 1 23 53 74 53 74 0.99

2 16 9.6e-05 0.014 17.1 0.1 1 20 142 161 142 163 0.95

3 16 0.0041 0.61 12.0 0.6 1 23 252 274 252 274 0.98

4 16 0.076 11 8.0 2.9 2 20 281 299 281 302 0.94

5 16 0.08 12 7.9 3.7 1 23 383 405 383 405 0.87

6 16 0.00029 0.043 15.6 1.2 1 23 457 480 457 480 0.96

7 16 1.8 2.7e+02 3.6 9.2 1 21 499 519 499 521 0.92

8 16 0.092 14 7.7 3.2 2 23 591 612 591 612 0.98

9 16 0.00052 0.077 14.8 0.1 1 23 667 689 667 689 0.98

10 16 7.2e-05 0.011 17.5 3.2 1 23 694 716 694 716 0.96

11 16 0.019 2.8 9.8 0.1 2 21 752 771 751 772 0.94

12 16 0.059 8.7 8.3 3.6 4 23 805 825 805 825 0.96

13 16 9.3e-05 0.014 17.1 3.4 1 23 874 897 874 897 0.95

14 16 2.9e-06 0.00044 21.9 3.0 2 23 905 927 904 927 0.96

15 16 4e-05 0.0059 18.3 0.2 1 23 958 980 958 980 0.98

16 16 0.0073 1.1 11.2 0.0 1 21 985 1005 985 1006 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0064	0.95	11.4	2.6	1	23	53	74	53	74	0.99
2	16	9.6e-05	0.014	17.1	0.1	1	20	142	161	142	163	0.95
3	16	0.0041	0.61	12.0	0.6	1	23	252	274	252	274	0.98
4	16	0.076	11	8.0	2.9	2	20	281	299	281	302	0.94
5	16	0.08	12	7.9	3.7	1	23	383	405	383	405	0.87
6	16	0.00029	0.043	15.6	1.2	1	23	457	480	457	480	0.96
7	16	1.8	2.7e+02	3.6	9.2	1	21	499	519	499	521	0.92
8	16	0.092	14	7.7	3.2	2	23	591	612	591	612	0.98
9	16	0.00052	0.077	14.8	0.1	1	23	667	689	667	689	0.98
10	16	7.2e-05	0.011	17.5	3.2	1	23	694	716	694	716	0.96
11	16	0.019	2.8	9.8	0.1	2	21	752	771	751	772	0.94
12	16	0.059	8.7	8.3	3.6	4	23	805	825	805	825	0.96
13	16	9.3e-05	0.014	17.1	3.4	1	23	874	897	874	897	0.95
14	16	2.9e-06	0.00044	21.9	3.0	2	23	905	927	904	927	0.96
15	16	4e-05	0.0059	18.3	0.2	1	23	958	980	958	980	0.98
16	16	0.0073	1.1	11.2	0.0	1	21	985	1005	985	1006	0.93

Sequence Information

Coding Sequence: ATGATTGAATGTGAAATTTGCAAATCTATTGTTGAAAGATCCGTTTTTAATCAACATTTACAATCCCATGACAGTGATTCGGATAAAAAAATCAATTCTATACCGATTTTAAAACTGTGCAAATCAAATGGTACTTGGATATGTAAACCTAGCGTTTACAAATGTAAAATTTGTTTTCGAAAATTTGATTTTCTAAATTTGACGGCACACGAAAAAACGCATGAAAACAATGTTGGGAATATCCGAATAAAAAATGTAAATGAAATAAATAGCAATTTTTCTCTGCTCACCCTTAATCAATTAAACTGTCCAAAATGCAATGACGAACCGCTTTTAAATATGCATATAAATCAATGTTCAAAAAGTTCTAAAGACATATTGAATGAGTTGGAAGGTAAATTCAAAACTATTACACAAACTGTATATGTTTGTACAGTTTGTGGAACTAGTTATACCGATCCATTCTTATTAAGAAATCATTTAACTTCATTATGTTCAAATACTGAAGTAAGAAGTAGTTTAAATCAAATAAATGCAACTAACAGTAATGGATCAATCGTACAGAATGTACCAGAAGTAGACATGGCAAGTAATATAAGAGTGCAAAGAGAACACGAAGATAACCATCATAGTATTTGTACAGTTAAGGAAGCCAAATATTTCTCCATCAAAAAATTGCCAAGTAATACAAATATTTCTCTAATTTTTATCACCAATCAAAATCGCAGACAAACATCTAACAGTAAAATTATATATGTTTGTACTATTTGTGAAACTTCATCTGTAGATCTACATTCATTCGCATTACACATGAGCTCCCATTCAGAATGCAGTTTGCGCGAATGTGTTGTGTGTGATCAAAAATTTTCGACTGTAAATCATTGGCAAAACCATATGACTTGTCATCAAAAAGAGTTAGATTTAAATTTATCGAATGCTGAAATTAATTCTCTAGATGTTGAACCTGATACCAATATCACTTCTAATTTGGAAAGCACGGAACCTGTAACTGATTCATCAACCGTAAGAAATGAAGAAAACAATTCCATTGAATTAAATATTGACTTCAGAGACTCACCAACTTCAAACGTTAATACAGACATTAAACTTATGACTCATCAAACTCTTCATGATAAATCAAGACGATTTCGCTGTAAATACTGTGATAGAACATTTTCTGCAAGGGGCCCATGTACAAATCATGAAAAGTCGCATGACCCCAATGGATATAAAAATGCAGTCAAAGGTATGGTTTATCAATCAACTGAAATCCAAAACAGCGTACCAATAGAAAATAATCATATTCTAAATGCTAATCCGATTTTAACTAAACATAAGAAAAAGAAAGCATTATTGCAATCAAAATATTTTGTCTGTTATATTTGTGAAAAACAATTTCCCAAACGTTTTGACTTAACAAACCACTTAAAATTACAACATCGTGTAAATCCTAAAGCGTCTACAGAACATGTCGTTACTCATGTCAATAAAATGTATACATGCCAATATTGTAGTAAACAATTTAATCACAAGAGTTCTCACTCAAATCACATCAAATGTCATCAGAATAAAAACAAAAAAATTAAAAGCGTTAACAATGCAAATACAATTCAAGTGGAAATAGAAAGAAATGAAGAACTTCAACAAGAAAACAATGGAAATAATTCTGAGTTTGATAATAGTTCATTAATTGAACCGAGTATTACAAACTCAACAATGACTGCTGCTTCAACGGATCATGTAACTACTCATTCGAATCATGGACTACGCAAATGCAGATATTGTAATAGACAATTTCTTAAGAAAAGCGCATACTCCAATCACCTCAAATCTCATAGTGATAAAAAATATAATCGTGTTGAAAGTAAAAACTTAAATGTAGTAAAAACTGATGTAAATGAAGGATATCAACAAGAAATAAACTCAAACGTTTCTGACATTAATAGTTCATCCATAGAGCCAAATATTGCGATTTTAGAAAAGAAAAATCGTTTTTGGTTTCCTTGTGACGCATGCGAGGAAAAATTTTCTACTCCATTCCTCTTAGTTGTACACCGAAGGTCACATTGTATTGAACCTTATTTATGTAAAATTTGTAACAAGTCCTATAGTGTGAGACATCTTTGGAACAGACACATGAAATCGCACTACCGGAGGAACGAACTTAAAAATAAAAGCAAAGAGCAAAATAATGCCTCAGAATCAGCTACTGGTACATTACAACCTGAACCGGTACAGCAGCAAAACCAGTTAAAATGTGGGTATTGTAAAAGAGGATATTACTCGATATCTGAGTGGGAAAAACACATGTCGCTGAACAGTGAATGTCGTCTTCGTTGTAAAAGTAGCCTTCCAGAGTTTACTACGGATCAAGCAAGGGAAAATTTTTTTAAATCTACACGATTTGAATATCATATTTGTAAGAAAACATATAGTTCTTTGCACAACCGCAAAAAGCATCTCATAACTATTCATAAACTGTCAAATGTAGATTTGGAAACTAGTGCAATTACTGATGTCGTTGAACAAAAAAATAAAATAAAGACAGGAAAAATTCAACAGGATGCAAAACCGGTAAATAAAAAAAAAAAACCACTATTGATTTCCGGCGATAAAAGCCATCAATGTCTTATATGTGGTAAACGTTACAGCAACAGACCTAATTTAAGTCGACATCACACTATTAGTCATTCGATGAAGGTTAATGTTTTAAATTGCACCATTTGTAATAAGTCATTTAAAAATAATTACTCATACCGACAACATTTAAGAACTAAACACAGACATTTATTAAACAAAAATACGAGGCGTAGAGCAAGAGATGGGGAAAAAAGTATACCATTGATGAAATACAAAAATGATATCGCCCAATACTTCTGTAAAATATGTAAAGTGGAGTTTTCTGACAATGTTGCACTAGAGAATCATATAAAAATCCATATCCATAATAAATATGCGTGTGTTGACTGTGGCCAGAAATTTGAGACTAATGCTCTTTTGGGTGAACACATTTTAAATAGCAACTGTGCCAGTTCTTAA
Protein Sequence: MIECEICKSIVERSVFNQHLQSHDSDSDKKINSIPILKLCKSNGTWICKPSVYKCKICFRKFDFLNLTAHEKTHENNVGNIRIKNVNEINSNFSLLTLNQLNCPKCNDEPLLNMHINQCSKSSKDILNELEGKFKTITQTVYVCTVCGTSYTDPFLLRNHLTSLCSNTEVRSSLNQINATNSNGSIVQNVPEVDMASNIRVQREHEDNHHSICTVKEAKYFSIKKLPSNTNISLIFITNQNRRQTSNSKIIYVCTICETSSVDLHSFALHMSSHSECSLRECVVCDQKFSTVNHWQNHMTCHQKELDLNLSNAEINSLDVEPDTNITSNLESTEPVTDSSTVRNEENNSIELNIDFRDSPTSNVNTDIKLMTHQTLHDKSRRFRCKYCDRTFSARGPCTNHEKSHDPNGYKNAVKGMVYQSTEIQNSVPIENNHILNANPILTKHKKKKALLQSKYFVCYICEKQFPKRFDLTNHLKLQHRVNPKASTEHVVTHVNKMYTCQYCSKQFNHKSSHSNHIKCHQNKNKKIKSVNNANTIQVEIERNEELQQENNGNNSEFDNSSLIEPSITNSTMTAASTDHVTTHSNHGLRKCRYCNRQFLKKSAYSNHLKSHSDKKYNRVESKNLNVVKTDVNEGYQQEINSNVSDINSSSIEPNIAILEKKNRFWFPCDACEEKFSTPFLLVVHRRSHCIEPYLCKICNKSYSVRHLWNRHMKSHYRRNELKNKSKEQNNASESATGTLQPEPVQQQNQLKCGYCKRGYYSISEWEKHMSLNSECRLRCKSSLPEFTTDQARENFFKSTRFEYHICKKTYSSLHNRKKHLITIHKLSNVDLETSAITDVVEQKNKIKTGKIQQDAKPVNKKKKPLLISGDKSHQCLICGKRYSNRPNLSRHHTISHSMKVNVLNCTICNKSFKNNYSYRQHLRTKHRHLLNKNTRRRARDGEKSIPLMKYKNDIAQYFCKICKVEFSDNVALENHIKIHIHNKYACVDCGQKFETNALLGEHILNSNCASS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -