Ttri003887.1
Basic Information
- Insect
- Therioaphis trifolii
- Gene Symbol
- -
- Assembly
- GCA_027580255.1
- Location
- CM050405.1:45428699-45431560[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.09 13 7.7 0.4 1 20 29 48 29 50 0.93 2 15 0.00028 0.042 15.6 0.3 1 20 74 93 74 95 0.94 3 15 0.0024 0.36 12.7 6.4 2 20 101 119 97 121 0.92 4 15 0.13 19 7.2 7.1 1 23 324 346 324 346 0.94 5 15 0.00027 0.04 15.7 1.2 1 23 398 421 398 421 0.96 6 15 1.7 2.5e+02 3.7 9.2 1 21 440 460 440 462 0.92 7 15 0.17 25 6.9 6.8 1 23 531 553 531 553 0.98 8 15 0.00048 0.072 14.9 0.1 1 23 608 630 608 630 0.98 9 15 6.7e-05 0.01 17.6 3.2 1 23 635 657 635 657 0.96 10 15 0.018 2.7 9.9 0.1 2 21 693 712 692 713 0.94 11 15 0.0019 0.28 13.0 6.0 1 23 743 766 743 766 0.97 12 15 8.3e-05 0.012 17.3 3.4 1 23 815 838 815 838 0.95 13 15 4.5e-06 0.00067 21.3 2.9 2 23 846 868 845 868 0.96 14 15 3.7e-05 0.0055 18.4 0.2 1 23 899 921 899 921 0.98 15 15 0.0014 0.21 13.4 0.0 1 21 926 946 926 947 0.94
Sequence Information
- Coding Sequence
- ATGCATGGAAATAAAATGAATAAAATTAGAATAAGAAGTGTTGAAGAAATTAATAGCAATTTTCAATTGTTTACTAACAATAAATTTAATTGTTCAACGTGCAATATAAATTTTGAAGATGAACATCTGTTCAACATTCATGTAAGTCTCTGTTCAAAAAGATCTCAAAACATATTGAGTAAGTTTCGAGGTCAATTCAAAACTATTACACAAACTTCATATGTTTGTAATATTTGTGGAACCAAATATACCGATCCGTTATTATTAAAACATCATTTAACTTCAAATTGTAAGTATTGTTGTTGTAAGTATTGTGGTAAAACTTTTAATTCTAAAGAACTATGGTCAAGACACATGGATGAATTCCAAATATATAAAAATTGCAATAAATCTAATGCAAATTCCATTGAAACATCTGTAAATATATTACATAATCAAAATGAGATTGTCAATGATACTAGAAGTAATAGTCCTGACATAGTTTATATGGGTGCTGTAAAGAATAATAAATCGACTGTTCAAACTGTATCCTGTGTTTTAACGGCAAACAATAGTGTTGAAAATGTAAGCTACAAACACAGTCTAGGCACAAATGTCACAATAGTTAATAATTCTGATCAAACAGAAACAGACAAAGTGAACAGCATTGATTCAGTTCAAAGTTTATCGCAAAACTCCACAGTAAACAATTTTACTATGAATATACCAAAAGAAAAAGGCTTATGTTCAAATACTGAAGTAAAAAGTTTGGAAAGCATGGAACCTGTAACTGATTCATCAACCGTAAGAAATACAGAAAACAATTTCCCTGAATTTAACTTCAGAGACTCACCAACTTCAAACATGAATAGAGATATTGAACTTGTTCCAAAGTACAGAGCATCATATAGCAGTGATAAAGGTAACATGGCATTTCCTTCTGAACAAACACCTATGACTCATCAAACTCTTCATGATAAATCAAGACGATTTTGCTGTAAATACTGTGATAGAACGTTTTCTACAAGGGGCCCATGTACAAATCATGAAAAATCGCATGACCCCAATGGATATAAAAATGCAGTCAAAGGTATGGTTTATCAATCAACTGAAATTCAAAACAGCGTACCAGTAGAAAATAATCATATTATAAATGCTAATCCGATTTTGACTGAACGTAAGAAAAAGAAAGTATTATTGAAATCAAAATATTTTGTCTGTTATATTTGTGAAAAACAATTTCCCAAACGTTTTGACTTAACAAACCACTTGAAATTACAACATCGTGTAAATCCTAAAGCGTCTACAGAACATGTCGTTACTCATGTCAATAAAATTTATACATGCCAATATTGTAGTAAACAATTTAATCACAAGAGTTCTCACTCAAATCACATCAAATGTCATCAGAATAAAAATAAAAAAATTAAAAGCGTTAACAATACAAATACAATTCAAGTGGAAATAGAAAGAAATGAAGAACTTCAACAAGAAAACAATGGAAATAATTCTGAGTTTGGTAATAGTTCATTAATTGAACCGAGTATTACAAACTCAACAATGACTGCTGCTTCAACGGATGATGTAACTACTCATTCGAATCATGAACTACACAAATGCAGATATTGTAATAGACAATTTCTTAAGAAAAGCTCATACTCCAATCACCTCAAATCTCATAGTCATAAAAAATATAAGCGCGTTGAAAGTAAAAACTTAAATGTAGTAAAAATTGATGTAAATGAAGGATATCAACAAGAAATAAACTCAAACGTTTCTGAAATTAATAGTTCATCCATAGAGCCAAATATTGCGATTTTAGAAGAGAAAAATCGTTTTTGGTTTCCTTGTGACGCATGCGAGGAAAAATTCTCTACTCCATTCCTCTTAGTTGTACACCGAAGGTCACATTGTATTGAACCTTATTTATGTAAAATTTGTAACAAGTCCTATAGTGTGAGACATCTTTGGAACAGACACATGAAATCGCACTACCGGAGGAACGAACTTAAAAATAAAAGCAAAGAGCAAAATAATGCCTCAAAATCAGCTACTGGTACATTACAACCTGAACTGGTACAGCAGCAAAACCAGTTAAAATGTGGGTATTGTAAAAGAGGATATTACTCGATATCTGAGTGGGAAAAACACATGTCGCTGAACAGTGAATGTCGTCTTCGTTGTAAAAGTAGCCTTCCAGAGTTTACTACGGATCAAGCCAGGGAAAATTTTTTTGAATCTACACGATTTGAATGTCATATTTGTAAGAAAACATATAGTTCTTTTCACAACCGCAAAACGCATCTCATAACTATTCATAAACTGTCAAATGTAGATTTGGAAACTAGTGCAATTACTGATGTCGTTGAACAAAAAAATAAAATAAAGACAGGAAAAATTCAACAGGATGCAAAACCGGTAAATAAAAAAAAAAAACGACTATTGATTTCCGGCGATAAAAGCCATCAATGTCTTATATGTGGTAAACGTTACAGCAACAGACCTAATTTAAGTCGACATCACACTGTTAGTCATTCGATGAAGGTTAATGTTTTAAATTGCACCGTTTGTAATAAGTCATTTAAAAATAATTACTCATACCGACAACATTTAAGAACTAGACACAGGCATTTATTAAACAAAAATACGAGGCGTAGAGCAAGAGATGGGAAAAAAAGTATACCATTGATGAAATACAAAAATGATATCGCCCAATACTTCTGTAAAATATGTAAAGTGGAGTTTTCTGACAATGTTGCACTAGAGAATCATATAAAAATCCATATCCATAATAAATATGCGTGTGTTGACTGTGGCCAAAAATTTGAGACAAATGCTCTTTTGGCTGAACACATTTTAAATAGCAACTGTGCCAGTTCTTAA
- Protein Sequence
- MHGNKMNKIRIRSVEEINSNFQLFTNNKFNCSTCNINFEDEHLFNIHVSLCSKRSQNILSKFRGQFKTITQTSYVCNICGTKYTDPLLLKHHLTSNCKYCCCKYCGKTFNSKELWSRHMDEFQIYKNCNKSNANSIETSVNILHNQNEIVNDTRSNSPDIVYMGAVKNNKSTVQTVSCVLTANNSVENVSYKHSLGTNVTIVNNSDQTETDKVNSIDSVQSLSQNSTVNNFTMNIPKEKGLCSNTEVKSLESMEPVTDSSTVRNTENNFPEFNFRDSPTSNMNRDIELVPKYRASYSSDKGNMAFPSEQTPMTHQTLHDKSRRFCCKYCDRTFSTRGPCTNHEKSHDPNGYKNAVKGMVYQSTEIQNSVPVENNHIINANPILTERKKKKVLLKSKYFVCYICEKQFPKRFDLTNHLKLQHRVNPKASTEHVVTHVNKIYTCQYCSKQFNHKSSHSNHIKCHQNKNKKIKSVNNTNTIQVEIERNEELQQENNGNNSEFGNSSLIEPSITNSTMTAASTDDVTTHSNHELHKCRYCNRQFLKKSSYSNHLKSHSHKKYKRVESKNLNVVKIDVNEGYQQEINSNVSEINSSSIEPNIAILEEKNRFWFPCDACEEKFSTPFLLVVHRRSHCIEPYLCKICNKSYSVRHLWNRHMKSHYRRNELKNKSKEQNNASKSATGTLQPELVQQQNQLKCGYCKRGYYSISEWEKHMSLNSECRLRCKSSLPEFTTDQARENFFESTRFECHICKKTYSSFHNRKTHLITIHKLSNVDLETSAITDVVEQKNKIKTGKIQQDAKPVNKKKKRLLISGDKSHQCLICGKRYSNRPNLSRHHTVSHSMKVNVLNCTVCNKSFKNNYSYRQHLRTRHRHLLNKNTRRRARDGKKSIPLMKYKNDIAQYFCKICKVEFSDNVALENHIKIHIHNKYACVDCGQKFETNALLAEHILNSNCASS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -