Basic Information

Insect: Therioaphis trifolii
Gene Symbol: -
Assembly: GCA_027580255.1
Location: CM050411.1:30411616-30414473[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.72 1.1e+02 4.9 0.2 1 12 59 70 59 73 0.89

2 15 0.13 19 7.2 2.2 1 23 94 116 94 116 0.96

3 15 0.0043 0.64 11.9 0.8 2 23 127 149 127 149 0.94

4 15 3.4e-06 0.00051 21.6 2.5 1 23 154 176 154 176 0.96

5 15 1e-05 0.0015 20.1 1.5 1 21 182 202 182 203 0.97

6 15 7.9e-05 0.012 17.3 0.4 1 23 210 232 210 232 0.98

7 15 1.7e-05 0.0025 19.5 2.6 1 23 253 275 253 275 0.99

8 15 0.088 13 7.8 5.5 1 23 281 303 281 303 0.93

9 15 3.6e-06 0.00054 21.6 6.9 1 23 309 331 309 331 0.99

10 15 0.04 5.8 8.9 3.8 1 23 337 359 337 359 0.93

11 15 2.7e-07 4e-05 25.1 1.7 1 23 365 387 365 387 0.98

12 15 6.1e-05 0.0091 17.7 8.1 1 23 393 415 393 415 0.98

13 15 0.00067 0.099 14.4 1.8 1 23 421 443 421 443 0.99

14 15 3e-05 0.0044 18.7 1.2 1 23 447 470 447 470 0.98

15 15 0.00032 0.047 15.4 2.0 1 23 476 499 476 499 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.72	1.1e+02	4.9	0.2	1	12	59	70	59	73	0.89
2	15	0.13	19	7.2	2.2	1	23	94	116	94	116	0.96
3	15	0.0043	0.64	11.9	0.8	2	23	127	149	127	149	0.94
4	15	3.4e-06	0.00051	21.6	2.5	1	23	154	176	154	176	0.96
5	15	1e-05	0.0015	20.1	1.5	1	21	182	202	182	203	0.97
6	15	7.9e-05	0.012	17.3	0.4	1	23	210	232	210	232	0.98
7	15	1.7e-05	0.0025	19.5	2.6	1	23	253	275	253	275	0.99
8	15	0.088	13	7.8	5.5	1	23	281	303	281	303	0.93
9	15	3.6e-06	0.00054	21.6	6.9	1	23	309	331	309	331	0.99
10	15	0.04	5.8	8.9	3.8	1	23	337	359	337	359	0.93
11	15	2.7e-07	4e-05	25.1	1.7	1	23	365	387	365	387	0.98
12	15	6.1e-05	0.0091	17.7	8.1	1	23	393	415	393	415	0.98
13	15	0.00067	0.099	14.4	1.8	1	23	421	443	421	443	0.99
14	15	3e-05	0.0044	18.7	1.2	1	23	447	470	447	470	0.98
15	15	0.00032	0.047	15.4	2.0	1	23	476	499	476	499	0.95

Sequence Information

Coding Sequence: ATGTCCGTAGTGAAAGCGCCTTCGCCTTCATCGATGATGGACATTATCATCGACAGGTCTCCGTCACCTATGTCTTATGAAGAAAAGATTTTAGCCAAGGAAAACATTAAGCTTATATCTGTTGAAGGTGTAGCAGAAGATACTCTTGACAATAATTTAATGTTCCGTAACATTTTCAAATGCTTACGCTGTGACCAGACTTTTGAAAACGAAGTCGAAGCTCACGATTGTATACCATTGCCCCTGAACATTAACAAACAAAAAAAATTAAAACGTGTGTTCAAATGTTCACTATGCGATAAACATTATCTTTTTCCATCACTCGCCATGCTTCATTTAAAACGTCATCAAAAATACTTAGATAGTAAATTAGTGAATGTATGTAATGTATGTGATTCCAAATTTCAAACTGCAAAAGAACTGAAGGAACATTATCAACAGAAGCACAATATCATCCAACATCAATGTCATATTTGTGATAAATTATTCAAACAAGCTAGGAATTTACAAAATCATATCATAGGACATTCAGGGAACAAACCATTTCAGTGTGAATTGTGTGGACGTAAATTTACAAGGGCTGATCATTTTGATAGACATCGAAGAGATAATTGTGACCAAATGGAATTCGAATGTGATTTATGTGGAAAAATTTATAATACTAAAAGAGGTATACGGACACATTTGAAAGTGCATTATGACAGTCCAAAGCCTGGTACCATGTGGGCGTTGTACACAGAATCTGGAAAGAAATACTATGAATGCACATTGTGTAGTAAAACGTTCACGCAATTTTCGAGATTCAAAGAACACATCAGAATACATACCGGTGAGAAACCTTTTGAGTGCCAAATATGTAATAAAAAATTTACCTGCCATTATAAACTTAAAATGCATGGCGACGTGCATTCAAATGATAGACCCTTCAAGTGTGATTATTGTGAGCTGTGTTTCAAAAATCGACGGTATCTTAACAAGCACATGCGCAAACATGATGAACACAAGCGGTATCAATGTCAACATTGCAACAAACAGTTTCAATGGTACAATAGTCTGAAATATCATTTGGCATCGCACTCTGGCGATAAACCATATGCATGTACAGAATGTGATAAGTCATATTCACATCTCAGTACACTGTTAGCTCATCAGAGAACTCATAATGGTATTAAAAATCATGAATGCCACATTTGCCACAAGAAATTTTTCCAATCTAGCACATTAAAGAGTCATTTAATCACTCACAGTGATGATAAACCGTTCAAATGTAATCAATGCCCTGCTCAGGTTTCTACTTGTACAGCATTAAAAACCCACTTGAATACACATGGTGGAAATTATCAATGCAGTTTTTGTGGCGGTACATTTTACCAATTATCTAGCTTAAGGTCTCATGAACGTAAGATACACGGAAGAACGGATTTCTTTGACTGTGGTATTTGTGATGAAAAATTCAATTCAAAAACACAAATGAAAGAGCATTTGAAACACGAGCATGAAATTCGGTTTACAAAAACAGTCACTGTATACGATGTTGATGATTTCGAGTATGATGATGTCTATGATAATTGA
Protein Sequence: MSVVKAPSPSSMMDIIIDRSPSPMSYEEKILAKENIKLISVEGVAEDTLDNNLMFRNIFKCLRCDQTFENEVEAHDCIPLPLNINKQKKLKRVFKCSLCDKHYLFPSLAMLHLKRHQKYLDSKLVNVCNVCDSKFQTAKELKEHYQQKHNIIQHQCHICDKLFKQARNLQNHIIGHSGNKPFQCELCGRKFTRADHFDRHRRDNCDQMEFECDLCGKIYNTKRGIRTHLKVHYDSPKPGTMWALYTESGKKYYECTLCSKTFTQFSRFKEHIRIHTGEKPFECQICNKKFTCHYKLKMHGDVHSNDRPFKCDYCELCFKNRRYLNKHMRKHDEHKRYQCQHCNKQFQWYNSLKYHLASHSGDKPYACTECDKSYSHLSTLLAHQRTHNGIKNHECHICHKKFFQSSTLKSHLITHSDDKPFKCNQCPAQVSTCTALKTHLNTHGGNYQCSFCGGTFYQLSSLRSHERKIHGRTDFFDCGICDEKFNSKTQMKEHLKHEHEIRFTKTVTVYDVDDFEYDDVYDN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -