Ttri034534.1
Basic Information
- Insect
- Therioaphis trifolii
- Gene Symbol
- -
- Assembly
- GCA_027580255.1
- Location
- CM050404.1:60273160-60278103[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.012 1.7 10.5 0.5 1 23 340 362 340 362 0.96 2 12 0.00019 0.028 16.2 1.1 1 23 370 392 370 392 0.98 3 12 0.00028 0.042 15.6 1.8 1 23 399 421 399 421 0.97 4 12 1.3e-06 0.00019 23.0 1.3 1 23 427 449 427 449 0.98 5 12 0.0061 0.9 11.4 1.3 1 23 456 478 456 478 0.96 6 12 8.9e-06 0.0013 20.3 0.1 1 23 484 506 484 506 0.96 7 12 6.2e-05 0.0092 17.7 0.1 1 23 512 534 512 534 0.97 8 12 9.7e-07 0.00014 23.4 1.2 1 23 540 563 540 563 0.96 9 12 2.4e-06 0.00035 22.2 0.9 1 23 569 592 569 592 0.96 10 12 6e-05 0.0089 17.7 3.1 1 23 598 620 598 620 0.98 11 12 0.00012 0.017 16.8 0.4 1 23 626 648 626 648 0.94 12 12 0.0059 0.87 11.5 0.1 1 21 654 674 654 678 0.92
Sequence Information
- Coding Sequence
- ATGGCTACTGATTCGGAACACGAAAGGAATTCAACAGCAACATCCAATACATGTTTAATATGTGATGGTAGCACAGGAGTGTCAGCACGAAATGCTATCTCAATTTTCCAGCATCGTGTAACATCTTCAGATCGTACAGTGGTAAAAGTTATTGATGGTGTTCTCGGTATAACTCTTTCATCAGATGATGTGCACTCTATTGTCGTGTGCCGTCGATGTTATAAAACTCTAAATGAAGTGGATGAAATCGAGGATCGATTAGCTGACATTAAATTAGAGCTTACCACTCAGTATCAACGTACACTCAAGTGTAAATCTGAAGGTGTAGATATACAGACTATAGACACAATTGATATTGAACAAGAAGTTGATACACCAAAGCCCGTTAAAAAAAGAGGACGTCGACCTAAAATAAAGGAAGAGACTTCTATAGATGGACCTGTTTCTAATACAGAAACTGTGCAAAATGATAATTATATCAAGGAAAATGACAAACAGGATATGAATACATCAGTACAGAATTTAATTGAAATGTTAGAGGAAGATGATAAGGATAACAATGAAGAGACTACTAATGATATCGAAGAAGATTGTACTCAAAAATTGATTCAGCCTTCTGATATTAAACAGGAAGCAATTCATCCAGATTTAGAAAATATGGAAAACATTGAAAATATTGAAAACATTGAAAACATTGAAAATATTGAAAATATTGACAACATGGACGAAGACGTTGATGAAGATGATATTGAAGGCAGTACAATACTTGATGATGATGATTCAGATTACGAAGGAAATAATGAATCTAAAAATGGTGGAGAGTCTAGTAGTCCTAAAAAACCAAAAATTACTAAAAATTCTGTTAAGAAAAAAGCTCCAGAAATTCTTATACCTCAAATGTTGGTTCATCATGATGGAGAAGTTTATACATGTTTACTGTGTAGCGTAGACAATAAATTTACTGCAGATGCTAGAGGTATTGTTGTTCATGCAAAAAATGTTCATCAAATCAAATTATTTATTTGCGATATTTGTGGACAAGAGTTCCTTAAAAGACCTGAACTGATGAAACATTTAGAACATCATGCTAATAGTGAAGATGGTAATTTTGTTTGCGACATTTGCAGTAGAGTATTTACTAATGTGCGTATGTTCAGGGTACATAAAAAAATGCATATGCCTCAATCTAAAAATCATACTTGTGAAACCTGTGGCCGGCAATTTGCGTCACGTAACACATTAGAAGAACATAATAATACACATACTGGTGTTCGACCATATCGCTGTGAGATTTGTGGTAAAGATTTTACTTCCAAGTACACATTTAAAGCGCATGAAAAGGTGCATACTAATCGTGAACGAAACTTTACTTGCATTAACTGTGGCAAAGCTTTTCTTACTGAGCAAAatctcattcatcatgaacgtacacattctggacttaaaaattatgtgtgtcaaaaatgtgGTAAAGCTTTTGGTACTGCACGCAATTTGGAAGTGCATTATGTTGTGcacactggttacaaaccatttatttgtcgcatgtgtggcaaagcatttgccagaaaagcggagattagagaccatgaacgtattcataccggagaaaaaccataccaatgtgaattttgtggaGCAACATTCAGCCAAAGAAGCAACTTGCAGTCTCATAAACGAGCTACTCACTATGATGATAAGCGTTATAAATGTACGGATTGTGGAAAAGGATTTAAAAGACGGCGTTTACTAGACTATCATATGAAAGCTGCACATACTGGAGAGAGACCATTCAAATGTGAAGTTTGCCATGCTTCATTTATATACCCTGAACATTTTAAAAAACATGCCCGTATTCATACAGGAGAAAAACCTTACTTGTGCGAAgtgtgcggcaaagcatttaacagtagagacaacagaaatgctcatcgttttgtacatagtgacaaaaagccttacgagtgtttagtatgtggggcaggatttatgcgtaaaccattgctttacaatcatatgactcaagcgggtcatttgaatgataCCATTGTGGTCAATCAACCACGGCTAGCAACTAGTCCAGTAACTATACAAGAAATCCAAGAAGACATTCAAATGCCAGGTACAGACTCTGAAATGGAATTGGCCATGGTTGTTGATTCTGATGGTAACCAAACAGCATTGCGCGACATGACTGAAGAAGAAAGAAAATTGTTCGCTGGAGAATTGAAAGAGCACATTCTTCTGCCAGGCAAACAAGATCTTGGAAATGATTTAAATTCCGTTGAACAAATACTTGTTGATAATAAATATCAAATCCAATACACAACAACTGACCAGCACGGTGATGTACATACCATGTTAAATATGGATCATCATGGTGATGATGCAGAAGTAGTAGATGTTGGACATATGGAAACTGTAACTGTCAGTGTGGGTGGTCAAGAACATCGTCAGTTAATAGTGCCAGCTACTCGTCATATTACATTGAATGAAAGTGATGCCGCTGCATTTGCTGAGCATGCATCTTTAACTGGTGAAAATGTTCAAATTGTACAGATACAAATACAAGATGAAGACGGGGAAGATCAAAAACATTGGTTCAATATTATACAACCTCAACAAGGTTAA
- Protein Sequence
- MATDSEHERNSTATSNTCLICDGSTGVSARNAISIFQHRVTSSDRTVVKVIDGVLGITLSSDDVHSIVVCRRCYKTLNEVDEIEDRLADIKLELTTQYQRTLKCKSEGVDIQTIDTIDIEQEVDTPKPVKKRGRRPKIKEETSIDGPVSNTETVQNDNYIKENDKQDMNTSVQNLIEMLEEDDKDNNEETTNDIEEDCTQKLIQPSDIKQEAIHPDLENMENIENIENIENIENIENIDNMDEDVDEDDIEGSTILDDDDSDYEGNNESKNGGESSSPKKPKITKNSVKKKAPEILIPQMLVHHDGEVYTCLLCSVDNKFTADARGIVVHAKNVHQIKLFICDICGQEFLKRPELMKHLEHHANSEDGNFVCDICSRVFTNVRMFRVHKKMHMPQSKNHTCETCGRQFASRNTLEEHNNTHTGVRPYRCEICGKDFTSKYTFKAHEKVHTNRERNFTCINCGKAFLTEQNLIHHERTHSGLKNYVCQKCGKAFGTARNLEVHYVVHTGYKPFICRMCGKAFARKAEIRDHERIHTGEKPYQCEFCGATFSQRSNLQSHKRATHYDDKRYKCTDCGKGFKRRRLLDYHMKAAHTGERPFKCEVCHASFIYPEHFKKHARIHTGEKPYLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGAGFMRKPLLYNHMTQAGHLNDTIVVNQPRLATSPVTIQEIQEDIQMPGTDSEMELAMVVDSDGNQTALRDMTEEERKLFAGELKEHILLPGKQDLGNDLNSVEQILVDNKYQIQYTTTDQHGDVHTMLNMDHHGDDAEVVDVGHMETVTVSVGGQEHRQLIVPATRHITLNESDAAAFAEHASLTGENVQIVQIQIQDEDGEDQKHWFNIIQPQQG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01329191;
- 90% Identity
- -
- 80% Identity
- -