Ttri033980.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Therioaphis trifolii
Gene Symbol
-
Assembly
GCA_027580255.1
Location
CM050404.1:51667187-51670768[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 29 0.17 25 6.9 0.3 1 20 39 58 39 59 0.95
2 29 0.0022 0.33 12.8 8.5 1 23 96 118 96 118 0.99
3 29 1.4e-06 0.00021 22.9 3.4 1 23 124 146 124 146 0.98
4 29 0.0011 0.17 13.7 3.2 1 23 152 174 152 174 0.98
5 29 7.4e-06 0.0011 20.6 3.3 1 23 180 202 180 202 0.99
6 29 9.4e-06 0.0014 20.3 3.5 1 23 208 230 208 230 0.99
7 29 7.1e-06 0.0011 20.6 1.6 1 23 236 258 236 258 0.98
8 29 5.4e-06 0.0008 21.0 1.3 1 23 264 286 264 286 0.98
9 29 1.8e-06 0.00026 22.6 0.5 1 23 292 314 292 314 0.98
10 29 2.4 3.5e+02 3.3 6.0 2 23 438 461 437 461 0.79
11 29 7.5e-07 0.00011 23.7 0.9 1 23 467 489 467 489 0.99
12 29 8.6e-07 0.00013 23.5 0.5 1 23 495 517 495 517 0.99
13 29 0.00017 0.026 16.3 6.6 1 23 523 545 523 545 0.98
14 29 0.0012 0.17 13.7 3.2 1 23 551 573 551 573 0.94
15 29 0.0001 0.016 17.0 0.3 1 23 579 601 579 601 0.97
16 29 0.0017 0.25 13.2 2.7 1 23 627 649 627 649 0.98
17 29 7.9e-05 0.012 17.3 2.8 1 23 655 677 655 677 0.98
18 29 7.8e-05 0.011 17.4 0.6 1 23 683 705 683 705 0.99
19 29 4e-07 5.9e-05 24.6 0.8 1 23 711 733 711 733 0.99
20 29 2.6e-05 0.0038 18.9 1.1 1 23 830 853 830 853 0.98
21 29 8.2e-06 0.0012 20.5 0.4 2 23 886 907 885 907 0.97
22 29 3.6e-06 0.00053 21.6 2.8 1 23 913 935 913 935 0.99
23 29 0.00016 0.024 16.4 2.9 1 23 941 963 941 963 0.98
24 29 0.0047 0.7 11.8 0.1 1 23 969 992 969 992 0.97
25 29 0.00024 0.035 15.8 4.1 1 23 998 1020 998 1020 0.98
26 29 0.00033 0.048 15.4 1.9 1 23 1026 1048 1026 1049 0.95
27 29 2.7e-06 0.0004 22.0 1.3 1 23 1075 1097 1075 1097 0.99
28 29 7.9e-05 0.012 17.4 3.7 1 23 1103 1125 1103 1126 0.94
29 29 0.03 4.5 9.2 0.5 2 20 1162 1180 1161 1182 0.91

Sequence Information

Coding Sequence
ATGACTGAAAAAATAGAAACACCAGTAATCAATAATTTATTATTTCAAAGTCCAAGTGAGTCCAAACATGTTGAAATGGTTGAACGCGAAGATGAAGCAATTCTTCCTAAAGAATATATTTGTAATAACTGTAAGATTGTTTATTACAAACGTTCAAAAATAGTAAGGCATTTAACATTTTCTTATTGTAAGAAGAAACCTTTAGCTAATGATAAATTAGTTCCTATGATTAAAAAATTACCTAGTTTATCAAAAAATAAACAATCAAATTTTAGATTTaaactttatcaatgcgaacattgttctaaatgttttctgaataagacaaagttaacccaacatactcgtacacatagtggagaaaaaccatttgagtgtgaaatttgtcataaaagcttttccaattcttacagtttgaagagtcatggaaaaacccactctggtgaaaaaccttataactgtgatatttgtcaaaaggcttttgctcattctcatattttaataaatcataagagaacacattctggggagaaaccatttaaatgtgaattttgtcaaaagtgttttgccacgtctgggactctgattgcacataaacgtacgcacacaggtgaacaaccttataaatgtgatttttgccaaaaaacattttctttatctagcagtttgagttcacatagaagaacacacacaggagatagacctcacaagtgcaatttttgtccaaaagcatttgcaaaaagtggtgacttagagagacataaacgcattcacactggtgttaaaccgtttcattgtgatgtttgcgaaaaatcgtttacacaatcatcgggtctaatcatacacaaaagaattcacacaggcgaaaggccatttgtatgtgatacatgtgaaaggtcatttactaattcagctagtttgattgcacacaaacgaacccatacaggaGAAACACCCCATATGCCTCTACGTGTACTCAATATACAACATGTGTCTCCTAGTCAAAACACCATGTACAAAAACACGTTCGCTGAAATACCAACGACGTCTACAACAGGTATATGGGATACTAATATTCCAACACCATCAATTGGAGGTTTTAGTTATAGTTGGTCTAACTGGTTTCAAAGTGAAATAGATTCTAGTAATTCTAAAGATATACAACATAGTGCTGGTGAAGATTCGACTCCATTTATGCAGGCTGCAATTAATGAAAGCGAAAATATGAATGATAAAAATATACTAAATGGAATGAATACAGCTTCAGTCAATAATGTTGTACCTATCAAAAGACCTGAAGGTCGTTGGTTAGagtgtgatgtgtgtcacaaaatgttcccttattcatccagacataaattaattgaacacaaacgtacacatactcgagaaaaaccatttaaatgtcctatatgtcaaaaatctttttctttatctagtactttaattgttcataaaagaatgcatactggagaaagaccattcaaatgtgatgtatgccctaaagcatttgctcaaaagtcaaagttgaacatacataaaagaattcacacaggtgtaaaaccatttcattgtgatttatgtctgaaaactttttctcattcttcaaatctaacggaccataagaaaactcacactcaagaaaaatcgtataaatgtgacatttgcttcaaattatttacgcatgctaatagtttgcgaaagcataaagtgttacacactgggtacaaaccgtatatatgtgaaatttgtcaaaaggcgtttgccaaaaaggcgagtttagatcgtcataagggtacacacaacggcgtacctcaatggataaaaccatatacagacattgcaaaagaaaagcaaatgaataatactgagaaaccattcaagtgtcatgtttgttttaaatcatttgcttctgtaaatggaatgactcgacacacagctaaacataatggacaagaccaatttcagtgtaatgtgtgtcataagactttcacaggcttttcagttttggctagacataagcgaatacatacaggagaaaaaccatttcagtgtgattactgtcctaaggcttttgcttattcttcaattctagtaacccataaacgcacacatacaggagaaaaaccatatcagtgtgatctttgtcctaaatcatacacacaatcatccagtttgatagttcataagcgaacccatTGGAGTCAACCACCAATCAACACAAATGAACAACCAATGATTTTACCACTTACTGAATCAAATACAACTCAATATGAGTTGCCTAGTACATCAACTACTGATGATTATAGTGATAACTGGCCTGGTTGGTATCCTACTGAACCCGATATGTCTCTTGTTACTAATGAACTTCCACAAATTTTACAAAACCCCACCGAAGAATCCATGGAAATTTCAGTGGATCCTGTAACTATTCACGATCCTAAAGATCAAACTGTGAAAATAGATGTAAAAACTGTGCCACAAAAGTTTAAGTGCGCTAAGTGTAAAGAATCTTTTGATGAAAGTTCTCTTTTGTTGAAGCATATTAGAAAAATGCACAGACCAAATGCAGTTTCAGTAAAAAAGACTGAGGAAACCACCATCAAATATCCTATTGTAAAACGCAAGAAGAAACGGGGTGAACGCCagctattagtatgtgatatttgtgaaagaccgttcaatgactcatataagttgaaagttcacaggcgaactcatacccgtgaaaaaccattcaaatgtgatgtttgtgagaagtcgtttattgataagtgtaatttaaaagaacatcagaaaatacacactggtgagaaacttttcgaatgtgatatttgtcataaaacatttttacagctgggcacattgactacgcacaggcgtacacataccggggaaaaaccttataactgtgatatctgtttgatgccattcgctttactgagtagcatgaagacacatatacggcgagcgcataccggtgaaaaacctcataaatgtgatttctgtcaaaaagcatttgtcaagcgcaatgatatgatacgacaccgaaggacacatactggtgaacgtccgtttgtgtgtgacatatgtcaacaatctttcacccaatcatacgtattggttttacataaaagaaatcaccattcagtcaataagcctcacaCTGGAAATCATGATGAACAGCTTGTACCAaaatgcactatacccaaagaaaagccattcaagtgtgatatttgccttaaatcgtttgccagccagtcaacattgaatacgcacaaacgaatacatacaggtgaaaaaccatttcattgtgacatttgtcagaaatcatttacccagtcatctggtctcataactcataaagctaatcatcattctgtagacaaatcatttgaacaaaatatcatcttagaacatttcgtcgacactaacaatatgtatacgcacaggagacctcagtatgctggcgatagaccatgtgaatgtggtgtttgtCAGTCATCTTTTAGTCAACCTTCCTTAATGAATGCACATTTTAATCAGCCTATGATGCTCGATAGGAACATGTATtatgcatag
Protein Sequence
MTEKIETPVINNLLFQSPSESKHVEMVEREDEAILPKEYICNNCKIVYYKRSKIVRHLTFSYCKKKPLANDKLVPMIKKLPSLSKNKQSNFRFKLYQCEHCSKCFLNKTKLTQHTRTHSGEKPFECEICHKSFSNSYSLKSHGKTHSGEKPYNCDICQKAFAHSHILINHKRTHSGEKPFKCEFCQKCFATSGTLIAHKRTHTGEQPYKCDFCQKTFSLSSSLSSHRRTHTGDRPHKCNFCPKAFAKSGDLERHKRIHTGVKPFHCDVCEKSFTQSSGLIIHKRIHTGERPFVCDTCERSFTNSASLIAHKRTHTGETPHMPLRVLNIQHVSPSQNTMYKNTFAEIPTTSTTGIWDTNIPTPSIGGFSYSWSNWFQSEIDSSNSKDIQHSAGEDSTPFMQAAINESENMNDKNILNGMNTASVNNVVPIKRPEGRWLECDVCHKMFPYSSRHKLIEHKRTHTREKPFKCPICQKSFSLSSTLIVHKRMHTGERPFKCDVCPKAFAQKSKLNIHKRIHTGVKPFHCDLCLKTFSHSSNLTDHKKTHTQEKSYKCDICFKLFTHANSLRKHKVLHTGYKPYICEICQKAFAKKASLDRHKGTHNGVPQWIKPYTDIAKEKQMNNTEKPFKCHVCFKSFASVNGMTRHTAKHNGQDQFQCNVCHKTFTGFSVLARHKRIHTGEKPFQCDYCPKAFAYSSILVTHKRTHTGEKPYQCDLCPKSYTQSSSLIVHKRTHWSQPPINTNEQPMILPLTESNTTQYELPSTSTTDDYSDNWPGWYPTEPDMSLVTNELPQILQNPTEESMEISVDPVTIHDPKDQTVKIDVKTVPQKFKCAKCKESFDESSLLLKHIRKMHRPNAVSVKKTEETTIKYPIVKRKKKRGERQLLVCDICERPFNDSYKLKVHRRTHTREKPFKCDVCEKSFIDKCNLKEHQKIHTGEKLFECDICHKTFLQLGTLTTHRRTHTGEKPYNCDICLMPFALLSSMKTHIRRAHTGEKPHKCDFCQKAFVKRNDMIRHRRTHTGERPFVCDICQQSFTQSYVLVLHKRNHHSVNKPHTGNHDEQLVPKCTIPKEKPFKCDICLKSFASQSTLNTHKRIHTGEKPFHCDICQKSFTQSSGLITHKANHHSVDKSFEQNIILEHFVDTNNMYTHRRPQYAGDRPCECGVCQSSFSQPSLMNAHFNQPMMLDRNMYYA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-