Ttri021365.1
Basic Information
- Insect
- Therioaphis trifolii
- Gene Symbol
- -
- Assembly
- GCA_027580255.1
- Location
- JALBXZ010000166.1:29659-35522[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.5e-08 1e-05 26.5 0.0 6 38 162 194 158 198 0.87
Sequence Information
- Coding Sequence
- ATGGTTTTAGACAGCAGATCTAGCTCAAATATTATAAAACATCTGAGGAATAAACATATCAGTGTTTTTAAAAAAATTGATCAAGGTGTAAAGAGGAAAGAAACTGACCATGTTGATGAAGATAAAAAAGTTCCAAAAACAAATTCATTGCATATCCAGGCTATCCAGCCAAAGCTTGATTTTACTAAAAGAACCATTTCCCAAGTTTGGATTGATAATCAAGAACAAAAGAGTGAAGCTATACATTTATTTAAAGAAGCTGCTTGCCATTTAAACACTTTACCTATTTTGAATAATTCTCAAACAACTTCAAGTAACCAAAATGTTGATTGTGACGAACCATCTTTTTTTCATTGGAATGCATCCCAAGATTCTCTAGAAATTACTTCTGTAGAAAATGAAATAAATATGTTTTTAATGGCTCGGGTTTATAAAAGAAAGTTGGGCAGTAGATCCTATAGAAATCAGCCAGATGATGTTATTGAAGAAGTACTAAACAAAATAGTGAATGGGGAAATGTCAATTTTAGCTGCAAGTaagcaatatcatataccatatgggacactttacaatagatatcatggtttacatggtaataaaccaggaggccaaccaatactgaatgaagcagaggagaaattattattggctgctgtcaccaaatgtggtgattggggttttcctctaaccttgatggacatgagATGA
- Protein Sequence
- MVLDSRSSSNIIKHLRNKHISVFKKIDQGVKRKETDHVDEDKKVPKTNSLHIQAIQPKLDFTKRTISQVWIDNQEQKSEAIHLFKEAACHLNTLPILNNSQTTSSNQNVDCDEPSFFHWNASQDSLEITSVENEINMFLMARVYKRKLGSRSYRNQPDDVIEEVLNKIVNGEMSILAASKQYHIPYGTLYNRYHGLHGNKPGGQPILNEAEEKLLLAAVTKCGDWGFPLTLMDMR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -