Ttri007447.1
Basic Information
- Insect
- Therioaphis trifolii
- Gene Symbol
- -
- Assembly
- GCA_027580255.1
- Location
- CM050405.1:85644885-85646990[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.7e-08 3.5e-05 24.7 0.0 3 40 17 55 15 58 0.93 2 2 7.7 3.1e+03 -0.7 0.1 28 43 494 510 494 511 0.87
Sequence Information
- Coding Sequence
- ATGGTCCGTAATTATATAAAAAAAAACCTTAGGGTTAATTACTCATTAGATGATTTGAAAAAAGCTGTTGATGCAGTTCAGTGTCAAGGAGTTACATTAAAATATGCCTCAGAAACATATGGTGTTCCCCTGTCAACATTGGCTAAAAAATATAAAAAAAGCCATGATAATGTTACAGTTGGAGGTGGAAGGAAGAAAGAACTTACTGATGAAGAAGAACAAACACTTATGGTATATTTAAAAACATGTAGTGCAAGTGGTGAAGGCCTTACAAAAGCCGAAGTTATAGAATTAGTTACAGAGTATGTTAAACGTGAAAAAAAAGATTCTAGATGGGTTGATGGAAAGGGTCCAGGATTGGATTGGTTCAACTCATTCATGAATAGACACCCAGATCTAAGCATGAGAAAAGGTGAACTCCTTTCTTCTCAAAGAGTTCGAGGAGCTGATCCTTTTGTAATTAATGATTTTTATAAAAAATGGTCAAGTGTATTAGATGAAGCACAAATAGACATTGAAACCGATAAAAATATTATTTTTAACTGTGATGAATCTAGTTTTACTCATGATCCTAAGGATGTCAAAGTGATTGCTGAAAAAGGAAAAAGAAGAGTTTCAAAAAATATAGCAGGGTCAGGAAAAAAGAATACTACTGTCATGGCATGTGGCGCAGCAAATGGTTTTAAATTACCTCCATTAATTATTTTTCGTGGGAAATATGTTTGGTCCAGTTGGTTTCATAAAGATGCTTATCCAGGTACATGTTATTCTTCACAGAAAAAGGGTTGGATGGAAGGAAGCATTTTTGCTCATTGGTTTTCTAAAGTTTTTATAAAAAATATACCTAACAAAAATGAGCGCAATGGTAAAAAAGCAATTTTACTTTTTGATGGTGCCAAATTTCACTCAAATTTGTCAGTTGCTAAAGAAGCAGTTGAAAATGATGTAATTTTAGTCAAATTACCTCCTAATATGACACACTTGATGCAGCCTTTAGATAAAACAGTGTTTCGGCCAATCAAATTAAAATGGGAAGAATTAATGCAACAATGGAATCGTAAAAATCCAGGTGAATGGCTTCCCAATAATGAATTTGCAGGTTTATTAGGTATTGTATGGGAAGAAGGTTTCAAAGGTAGAAATTTAAGGTCTGGATTTGAATCAACAGGTTTAGTACCACCTGATGTTACTAAATTTCCAATTGATGCGTATGATGCAGTAAAATGGAAACGTTATTGTGATATTATGAATAATAATCCGAATATAAATCCTGGAAACGAGATATGTGAAGTGTCTAATAGTACATTAACACCTAATAATTTACAAGAAGTGTCTAATAGTACATTAACACCTGATAATTTACAAGAAGCTAGTACTTCCACTAATATAATATATGAAGCCTCAACTTCTAACAATTCAAAACAAAACTCAAGTTTTGAATTGTTCATAAAACAACATTTAAGTGAAAATCGTAAAAAAATATCTACTGCAACATTGAATTTAAAAAGAAAACGTTTAACAACAGAGTTAGGAAGTGTTTTAACTTCTCAAGAAGCAATGCAAAAAATGAGCCAAATCGAGAAAGAGTTAAAATATAAACAAGAAAAAATAAATGTTAAAAGAGGTAAAAAAATACCAATAAGCAAAAGTAAATCAAAGTATGTACCAATAGATGATGAGTCTGATGATAGTTCTCTCTTTGAAGAAGATAATAATATTCCAGCTAAAAAAATTAAGTTTAAAAATGGAGATTATATTAGCTCATCTGGTTCTGAGTTAGAAATTGAAAGTGATGATCAATCTATTGATGAAAAAAAATTAAAAATTGATATTAAACTTGAAAGTTACTATGCAATTTATTATGAAGATACTTGGTACTTAGGACGTGTTATTGATTTTTGGGATGAAAACAAAACAAAAATTAAATTTATGAAAAAAGATCTTGATAATTATATATGGCCAAGAAAAGAAGATATTCATACTGTTGAAAATAGATTTATTTTTTATGGACCTATTGACTTAGTTGGCAACTATCCATTTAAAGTTAAAAGATCTGATGGTTTAAGAATAATTAAAGAATATAAGAATCTAAAAAAGAAGACTTAA
- Protein Sequence
- MVRNYIKKNLRVNYSLDDLKKAVDAVQCQGVTLKYASETYGVPLSTLAKKYKKSHDNVTVGGGRKKELTDEEEQTLMVYLKTCSASGEGLTKAEVIELVTEYVKREKKDSRWVDGKGPGLDWFNSFMNRHPDLSMRKGELLSSQRVRGADPFVINDFYKKWSSVLDEAQIDIETDKNIIFNCDESSFTHDPKDVKVIAEKGKRRVSKNIAGSGKKNTTVMACGAANGFKLPPLIIFRGKYVWSSWFHKDAYPGTCYSSQKKGWMEGSIFAHWFSKVFIKNIPNKNERNGKKAILLFDGAKFHSNLSVAKEAVENDVILVKLPPNMTHLMQPLDKTVFRPIKLKWEELMQQWNRKNPGEWLPNNEFAGLLGIVWEEGFKGRNLRSGFESTGLVPPDVTKFPIDAYDAVKWKRYCDIMNNNPNINPGNEICEVSNSTLTPNNLQEVSNSTLTPDNLQEASTSTNIIYEASTSNNSKQNSSFELFIKQHLSENRKKISTATLNLKRKRLTTELGSVLTSQEAMQKMSQIEKELKYKQEKINVKRGKKIPISKSKSKYVPIDDESDDSSLFEEDNNIPAKKIKFKNGDYISSSGSELEIESDDQSIDEKKLKIDIKLESYYAIYYEDTWYLGRVIDFWDENKTKIKFMKKDLDNYIWPRKEDIHTVENRFIFYGPIDLVGNYPFKVKRSDGLRIIKEYKNLKKKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01433022;
- 90% Identity
- iTF_01433022;
- 80% Identity
- iTF_01433017;