Ttri040170.1
Basic Information
- Insect
- Therioaphis trifolii
- Gene Symbol
- -
- Assembly
- GCA_027580255.1
- Location
- CM050404.1:143731972-143736060[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.8e-06 0.0011 19.9 0.0 5 36 6 37 2 40 0.93 2 2 0.1 40 5.3 0.0 3 38 61 96 60 100 0.89
Sequence Information
- Coding Sequence
- ATGTCGAACAGCATGTTGAATGAAGCTGTGAGGTCGGTGTTGTCTGGTGATATGTTAGTGCCCTCCGCATCGCGCACTTTTGGCGTCCCCGAAACAACTATTAGGCAGCACTTGCCGGCGGGTTTCAAACCGAAGAAGATGAAAAAAGTATATACTTCGTACGAGGAGGGTACACCAAAAGAGCGACTATTGCAGGCCGCATATTACATATTCCGTGGCATGACCCTCGGTGAGGTTTCCCGTAAGACTAAGGTCCCCCGATCGACACTGAAACTAAAGATCAAGACCGGTGTCATCTCTCCAAACCTTACACTTCTTCCGACGTTTGTCCCGGGTGGTCCCATCACGACCACCACTCCGGCCGTCGCCATCAGGACCCCAGCTCCGGCCACTGCCGTCGAGTCCCCCGCTCCAGCCGACGTTGTCAATCACCCCGCTCCGGCCACCACCGTCGAGCACACTGATCTAGCCGTCACCCAGCCGTCCATGTCACGGCCGACGACTACTAAACTCGTAAAAATGTATAAAGGGAATGGAAAATTTCAAATCGTGGAGAAAGTGGTCCCGGTGCACAATCGAAGTGCATATTTCCCACGGGCCATTTCTTCATGTAAGAGAGTAGCCTCACCGCCTCTGACGCCAAAAGAAAAAACGCCGTCTCCTCCTCCCCCCTACCGATTTATAGCCTTTGAGGGCAAACACGAGAGGTTTGAAGACGATGACCTGACTGATTCCACTCCAAAAACGTTTCACCCGCTCATGTTAAGCAGAATTCATCCGGCACTGTCGCCTGCAAGAAAAGTGGACGGGGATGTGTACGACTATACGTCTTTGGACGATGACATGACATTGAATCCGTCGGAACTATCTCGCGTCCCAGGACCACCTAACCGTATGTCTCCTTCACGCCTGCCGCCCGCACCGTCGCCGACAAAAAAAGTGGACGGGGTTGTGTACGACAACAAGTCATCGGACGGAGGAACGGGTAAACTTAATTCGTGGGAATTACCGGCCGTACCCGGCCCGTCCTGTAATTCTCCGTCGTTGAATTTTATTCCAACGTCGCCGAACGCGATTACATGTGCCGGAGTCGGAGAACCGGAGTCGGTGAAAGCTCGTATGCCGCGATCCACGGTGGCCGAAAAAATGTTTACACCATCCGCGTCACTTAAAAACCTCAAGTACTGTCCAATCTGCCCATTCACCACCGCCGACCACAAAATAGGCCGGCATATTGAAAACAAGCATCCAGGCATGTGCACTAACGTCCGCATGGTGAGCCGCATAATTGGGGATGCGTCAAGAAAAGGGACTCCTTTAGTCCCTATGAGAGTTATTGAGACGTGCTTGGGTCCGTACTGGGGCGACCGTCCATACAGAAGAATCGCGTTTCAACTGACCAGAATGGGTGGATTAAAAGTGTACGGGGGTTCTTGGGATCTGGAAGGGGTGCCCGTTGTGGAGGACCCATTCAAAGAATTCCTGATCCCCGACCACTCCACGGACAATAAGGTGGCACGTCCGACTACGAAGCCGGTAACCGAGTCGTTGGTGGAATCGGTAGAAACATCACGGGTCGTTGAAAAATCAGTAGTTACGACGGAAGAGGTGGCTTTCAATCCGGCCGATGGGACTCGAGTGCTCAAGAGCCAAATTAAAGATAATGGTTTGTCGAAGAGACTGCCCAGAGACCACCCACTGATGTTGTGGTATTCGAAAACGCTGGGTCTGACCCATGGCCCGGGGTCAGACGCGGCGAAGAACTATTTGGCAAACGTGTCTCGGGTTTTGTGTGCCATCGACCAGTGGCTACGGGACAGGGACACCGTGCCTAGCCACTGGTCTGATTTGATGACGGCGCCGGTGGAAGCTTATTCTGAATACCTGAAAAAACGTGAAGAATTGGGCCAAACAATTTCGACTTCAATCAATTACATGAAGAATTTGAGAGGGCTGTTCCAGCTGGCCAAAGAGGAATACGCCTGGGACGACCCTTCGTTCCCCCGCGATTTCACTGGACAGCCCTCCAAAGAAATCATCATGCGGATCAATATGGAACAAATAAAAAATGAAATTCCAATTCAACTGGACGAATTGGAAAAGTCGTTCGGATCGGCGGGCAAGGTGTCCGTCCGATCCGAACGAAACAGTCCGACAGAACAAAAAGAGATGTCCTGTTTGTGGCGAAAGGCTTCATCCGGTCTGGCCATAATTTTATTGTGGCAGACAAAACATCGCAGTGGGGTACTTATAAACATGACCCTCAGAGAGTGTCATTCGAGGCAGAAGCGTGCCGGTTTCGTGGTCGTCACCATCGCAAAACATAAGACGGGCGACAAGGAACCGGCCACTTTGGTCTTCGACCAGTCAATTGAGTCTCTCTTGATAAGATACCACGACCTGCGGTGCCGTGTGGAAGACGCCGAGACCGAGGCATTTTTTATCACCAATCGCGGTAAAAAAATGGCAAAACTGTACGAGGACGTAAATCGTGCGTGTGGTATTCAAATGAGCTCATCGTTGTTTCCATTGGACCATTCTGAGGAAACAGCCGCCCTCCACTACCGAATGGTAAATCCTGAGACCGCCATTCGCCGTCAAAACACCATTCGAATGGTGGACGACACGGCCCTGTGTGACGAGTTCATCCGCCAAAACTTCAACGATTTCTTCTCAAATGATATTTATCGAGACTTCCCGACTAGGGAAGAATTTACAAAAATTTTTAAGAATTCGGAGGTATTTGCACGATATCCGTCAGCCAGGATATCGGACGAGATGTTTGAGGCCTACAGGCACAGGTCGGAACATCAGAAACTGGTTCCGCGTGCAAAAGAACTGGCCAAAATGTGTGACAGAGCGGGCTATAAGTCCCATAATATTTCTCGGATGGGTGTTATAGACGTGGCCAGGAACACAAGGGTGAAAGGTTGGTTGAGATACCCAAAATAA
- Protein Sequence
- MSNSMLNEAVRSVLSGDMLVPSASRTFGVPETTIRQHLPAGFKPKKMKKVYTSYEEGTPKERLLQAAYYIFRGMTLGEVSRKTKVPRSTLKLKIKTGVISPNLTLLPTFVPGGPITTTTPAVAIRTPAPATAVESPAPADVVNHPAPATTVEHTDLAVTQPSMSRPTTTKLVKMYKGNGKFQIVEKVVPVHNRSAYFPRAISSCKRVASPPLTPKEKTPSPPPPYRFIAFEGKHERFEDDDLTDSTPKTFHPLMLSRIHPALSPARKVDGDVYDYTSLDDDMTLNPSELSRVPGPPNRMSPSRLPPAPSPTKKVDGVVYDNKSSDGGTGKLNSWELPAVPGPSCNSPSLNFIPTSPNAITCAGVGEPESVKARMPRSTVAEKMFTPSASLKNLKYCPICPFTTADHKIGRHIENKHPGMCTNVRMVSRIIGDASRKGTPLVPMRVIETCLGPYWGDRPYRRIAFQLTRMGGLKVYGGSWDLEGVPVVEDPFKEFLIPDHSTDNKVARPTTKPVTESLVESVETSRVVEKSVVTTEEVAFNPADGTRVLKSQIKDNGLSKRLPRDHPLMLWYSKTLGLTHGPGSDAAKNYLANVSRVLCAIDQWLRDRDTVPSHWSDLMTAPVEAYSEYLKKREELGQTISTSINYMKNLRGLFQLAKEEYAWDDPSFPRDFTGQPSKEIIMRINMEQIKNEIPIQLDELEKSFGSAGKVSVRSERNSPTEQKEMSCLWRKASSGLAIILLWQTKHRSGVLINMTLRECHSRQKRAGFVVVTIAKHKTGDKEPATLVFDQSIESLLIRYHDLRCRVEDAETEAFFITNRGKKMAKLYEDVNRACGIQMSSSLFPLDHSEETAALHYRMVNPETAIRRQNTIRMVDDTALCDEFIRQNFNDFFSNDIYRDFPTREEFTKIFKNSEVFARYPSARISDEMFEAYRHRSEHQKLVPRAKELAKMCDRAGYKSHNISRMGVIDVARNTRVKGWLRYPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -