Ttri029683.2
Basic Information
- Insect
- Therioaphis trifolii
- Gene Symbol
- -
- Assembly
- GCA_027580255.1
- Location
- JALBXZ010000062.1:158072-159064[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.5e-11 9.9e-09 36.1 0.1 1 35 16 50 16 57 0.94 2 2 2.1 8.3e+02 1.1 0.0 22 36 80 95 80 98 0.91
Sequence Information
- Coding Sequence
- ATGTCGGGAAGAAAAAAGCTGTGTACTAGAACTTACAAAAACTACACTGAGGAAAATCTCCAGGCTGCATTGGCTTTGGTCAAAAGTGGTCAAATTAGTCTTAGAGAAGCTAGTGCTATGTATGGCATATCGAAATCCACATTAAATCGTAAACAACATATGAAAAACATGAACAATGTCGGCAGGCCTTCTGGTTTAACTGAAGCAAATGAAGAAGCATTAGTTAATGGGCTTATAGCAGCAAGTAAGTGGGGTTTTCCTTTCACTTCACTTGACATACGCTGTATTGTAAAATCGTTTTTAGACTCTAACGGTTTGAGGGTGATTTTTTTTAAAAATAACATGCCAGGAACTGCTTGGGCTCGATCATTTCTCAAAAGACATAAAAATACACTCACTGTAAGATTAAGTGAAAATATAAAGCGATATCGTTCTGGAGTTAATAGTGaaataatgaacaaatattttgatgaacttaaaattactttaaaaaatgttaaccctgaagcaatattaaattatgatgaaaccaattttactgatgatccgggaaaagttaaagtaattgttcgccgtggagctaaacacgttgaaagaattatagatgcatctaaaagcagtacatctttaatgttttcaggaacagcgtcaggtactttgttaccaatttatatagtttataaatcagaccatttgtatgatgcttggaccaacaatgcccccaaaggaacacgatttaataggtcacacagtggttggtttgatacaacaatttttgaagattggtatttttcaatcgttctgccctacttcaaaaagttaggtgatcaaccaaaagttatgattggtgataatttggccagtcatgtttcacaaaaagttataaaaagctgccaagaaaacaacataagttttgtcttactacctcctaatagcacacatctaacacaaccgttagatgttgcttattttagaccattaaaaattaaatga
- Protein Sequence
- MSGRKKLCTRTYKNYTEENLQAALALVKSGQISLREASAMYGISKSTLNRKQHMKNMNNVGRPSGLTEANEEALVNGLIAASKWGFPFTSLDIRCIVKSFLDSNGLRVIFFKNNMPGTAWARSFLKRHKNTLTVRLSENIKRYRSGVNSEIMNKYFDELKITLKNVNPEAILNYDETNFTDDPGKVKVIVRRGAKHVERIIDASKSSTSLMFSGTASGTLLPIYIVYKSDHLYDAWTNNAPKGTRFNRSHSGWFDTTIFEDWYFSIVLPYFKKLGDQPKVMIGDNLASHVSQKVIKSCQENNISFVLLPPNSTHLTQPLDVAYFRPLKIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -