Basic Information

Gene Symbol
-
Assembly
GCA_027580255.1
Location
JALBXZ010000016.1:200610-203095[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.2e-13 4.8e-11 43.5 0.0 1 43 8 50 8 52 0.93

Sequence Information

Coding Sequence
ATGGCTAATAAATTTAAATACTCTGAAGAACAAATGCGATTGGCTTTGGAAGATGTAACTTCTAAATCATTATCATTAAATAAAGCTGCAGTTAAATATAATATACCAAAATCAACTTTATCTATGAAATTATCAGGGAAGACTCCTTTAATTAGAAAAATGGGCCCTTGTTCGTTTTTGAGTAATGAAGAAGAAAACCGAATAAAAGCTTGGATTTTAAATAATGCTACACTTGGTTTTCCTTTAAAAGAAGAAGACGTTAAAGACTCTGTTCAAAAAGTGATCAAAGATTTTCCCAGGACTACACCGTTCAAAGATTCCAGACCTGGAGAAAAGTGGATGAAATTATTTTTAAAAAGAAACTCAGAAATTACCAAAAGAAACACTGAAGTAATTTCAAAAGCTCGGGCAGCAGTAACGGAAGAAAAAATTCGTGATTGGTTTCAAGAGGTAGATAATTTTCTGATAAACGAAGGTTGTCGGGATGTCTTAGATGATCCAAGTAGGATATTCAATTGTGACGAAACCGGTTTGCAAACTTGTCCTAAATCTGGCAGAGTATTAGGTCCAAGGCATATTAAGGACTTTTATGAAATCGCACAAGGACACGAAAAGGGATGCATAACCGTATTATGTATTTATTCTGCAGATGGTACTGTTCCACCACCAATGGTAGTTTACCCATACAAGAGAATCCCCACTTCATTAATGACAACATTTCCTAATAATTGGATGATTGGAAGGTCAGATTCTGGATGGATGGTCAGTAGTACTTTTTTTGAATTTATTTCAAATGGTTTCTTTACATGGTTAGTTAACAATAAAGTAAAATTTCCTGTGATACTATTTGTTGATGGCCACAAAAGCCATTTAAGTCTGGAATTGGCAGATTTTTGTGCTCAAAATCAGATTATTATATATTGTCTTCCTCCAAATAGTACTCATATAATGCAACCATGTGATGTAGCCATTTTTAAGCCTCTAAAAGCAAGCTGGAAAAATGTTGTTGCAAAAAATAAAAGGTCTGGTAATTCAATAACTAAGAATAATTTTGTAAACCATTTTCAAGAAGCGTTTGACTCTGTACAAACAAGTTCAATCGTGAATGGTTTTAGAAAGTGTGGATTATATCCTTTTAACCCCAATGCCGTTGATTTTTCCAAATGTATTTCATATCGAAGAAATATACTGTTTCCAACTACAAATAATGATTCGAGATTACAAATTCCTGTTAAAACTTCATCAGAAGAATATAAAGCTGCATTAAAAGTGTTTGAAAATTATATTGGGAGAGCAAATACTGAAATATTTGAAAAAAAATTGCAAGACCCTCTTCTTGAAGCTGAAAAATCGCCATCCTTATTTGATTTTTGGGTTAAAACTAAAAAAAGTACTGAAAATCTTAATATTGAAGATATGCCAGTTGAAATTGCATATGATAATAGTGATAATCAGTTGTACAAATGTGATTTTGATTTATTGGAGCATCATAACATGATCTATGAATTTGAACAACCTAGTGCTGGGAGTGCATATACTGAAAATAATAATATTAATAATGTAACAACTGAAGGTGTGGAAATTAATTTAGATGATGTTTTTAAAGTAAATGAGACTGATAATATCATATTTGAAACTGTAAATGAGATGAAAGATGTGTATGCAACTGTGAATAAGACTGATATGTTTGAAACTGTGAATGAGACTGATATGTTTGAAACTGTGAATGAGACTGATATGTTTGAAACTGATGAGACTGAAAATAATATGAATGAAACTGTATTATGTGATATTGAAATAGAACCTAAAAATATAATAGATTGTAGTGTTAATAAGACTGATAATGTAATAAGTGAGGGAGTTATAGAAGTTAATATAGTTGATAAGTGTCCAAATGAAACCATTCAAAAAGCAGTAAGTGTAAATAAATGTAATTTAAGTCCTGCAACAATTGAAGAATCATGGAGCAAACATTTGTTTTGTCCAAAGCCTGACACAAAAAAGAAACAAAATAGAAGTCATGTAAAATTACCATTTGCTGTTACAGCAATTAAGTGGAGGGAATATCATGCCAGTAAAGAACAAGAAAAACTTAAAAAAGAAGAAGAATTGACACAAAAACGAAAACGTAGAGAGGAAATAAAAAAAGAAAAAGGTCTTAAAGTTGTCAAAAAAATCACAAAAAAACAGAAACCAAAAAAATCAAAAAGTGCAAAAAAAATTAAACCAGGATTGAATGTAATTATGGGGTCTGAAGATGATGGCTCATGTTTGTACTGTAAGGAACCTTACACTTTGTCAAAAAGTGGTGAGCCATGGATTAGATGTTGTGGATGTGCTGAATGGGCCCATGAACTCTGTGCTGGTTCTGAAAATACAGTTGCTTATATTTGTGAATACTGTCGTTAA
Protein Sequence
MANKFKYSEEQMRLALEDVTSKSLSLNKAAVKYNIPKSTLSMKLSGKTPLIRKMGPCSFLSNEEENRIKAWILNNATLGFPLKEEDVKDSVQKVIKDFPRTTPFKDSRPGEKWMKLFLKRNSEITKRNTEVISKARAAVTEEKIRDWFQEVDNFLINEGCRDVLDDPSRIFNCDETGLQTCPKSGRVLGPRHIKDFYEIAQGHEKGCITVLCIYSADGTVPPPMVVYPYKRIPTSLMTTFPNNWMIGRSDSGWMVSSTFFEFISNGFFTWLVNNKVKFPVILFVDGHKSHLSLELADFCAQNQIIIYCLPPNSTHIMQPCDVAIFKPLKASWKNVVAKNKRSGNSITKNNFVNHFQEAFDSVQTSSIVNGFRKCGLYPFNPNAVDFSKCISYRRNILFPTTNNDSRLQIPVKTSSEEYKAALKVFENYIGRANTEIFEKKLQDPLLEAEKSPSLFDFWVKTKKSTENLNIEDMPVEIAYDNSDNQLYKCDFDLLEHHNMIYEFEQPSAGSAYTENNNINNVTTEGVEINLDDVFKVNETDNIIFETVNEMKDVYATVNKTDMFETVNETDMFETVNETDMFETDETENNMNETVLCDIEIEPKNIIDCSVNKTDNVISEGVIEVNIVDKCPNETIQKAVSVNKCNLSPATIEESWSKHLFCPKPDTKKKQNRSHVKLPFAVTAIKWREYHASKEQEKLKKEEELTQKRKRREEIKKEKGLKVVKKITKKQKPKKSKSAKKIKPGLNVIMGSEDDGSCLYCKEPYTLSKSGEPWIRCCGCAEWAHELCAGSENTVAYICEYCR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00134155; iTF_01432945;
90% Identity
iTF_01432945;
80% Identity
-