Ttri037142.1
Basic Information
- Insect
- Therioaphis trifolii
- Gene Symbol
- retn
- Assembly
- GCA_027580255.1
- Location
- CM050404.1:102719052-102720789[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3e-18 2e-14 55.1 0.0 27 89 2 62 1 62 0.94 2 2 0.093 6.1e+02 2.2 1.3 69 86 137 158 112 159 0.67
Sequence Information
- Coding Sequence
- ATGGCAAAACGAGTGTTAGACTTGTACACTCTATATAAATTGGTCGTACAAAGAGGCGGAATCGTCGCGGTCATTACAAAAAAGTTGTGGCAAGAGATAATCCGTGGCTTGGGCTTACCACCATCTATCACTAGCGCGGCTTTTACGTTGCGCACACAATACGTCAAGTACTTGTACGCGTACGAGTCGAAAATGAACCAGTTCAGCACGGTGGATGAGCTGAACATGGCAATTGCCGGCAACCGGCGCGAGGGCCGGCGCAACAAGTCACTACTGTCCGagtacttgccacaactgccagtgtcgtccgctgctgccgggcaccaccaccatcagctgtccgcgtcaatgatgatgtctccgaactcggcggcgcaccttcagcaccagcagcaacagcaacagcagcagcagcagcagcagcaacagcaacatcagcagcaacagcaacagcattacgccaacgtgctggccgcggacgaccggttccgtcacttggccgccgccatcattgacaacagacaccgcgccgccgcggccgccgcagccgcggaacagcaggtcaacagacagcagcagcagcagccgtcttcgtcgtcgtcgccgtcGCGGCCTAGCAGTCCGCTGCAACGGATGGCCGGACAGCTCACAGGCCCCGTGGCCGCCGAATCGTCGCCGTTCAACGGCCACCTGCATCCACCACCGTATCAATCGGCCTCGATGATGGCCGCCGCCCACCAGGCTGCTGCCGCGGCCGGTGATCATTCCGGCAAACAGAGAGGTTAG
- Protein Sequence
- MAKRVLDLYTLYKLVVQRGGIVAVITKKLWQEIIRGLGLPPSITSAAFTLRTQYVKYLYAYESKMNQFSTVDELNMAIAGNRREGRRNKSLLSEYLPQLPVSSAAAGHHHHQLSASMMMSPNSAAHLQHQQQQQQQQQQQQQQQHQQQQQQHYANVLAADDRFRHLAAAIIDNRHRAAAAAAAAEQQVNRQQQQQPSSSSSPSRPSSPLQRMAGQLTGPVAAESSPFNGHLHPPPYQSASMMAAAHQAAAAAGDHSGKQRG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -