Tuni031221.1
Basic Information
- Insect
- Thereva unica
- Gene Symbol
- -
- Assembly
- GCA_949987705.1
- Location
- OX465282.1:29971400-29979572[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1.5 4.4e+02 3.6 0.1 2 23 303 325 303 325 0.94 2 16 0.00045 0.13 14.7 2.5 2 23 355 376 354 376 0.96 3 16 0.0024 0.7 12.4 4.9 1 20 382 401 382 404 0.94 4 16 5.1e-05 0.015 17.7 1.1 1 23 412 434 412 434 0.98 5 16 9.1e-06 0.0026 20.1 0.7 1 23 440 462 440 462 0.97 6 16 4.2e-05 0.012 18.0 1.0 2 23 471 493 470 493 0.92 7 16 0.18 52 6.6 0.5 1 20 502 521 502 526 0.77 8 16 0.024 6.9 9.3 3.7 1 20 532 551 532 555 0.94 9 16 0.0013 0.37 13.3 0.6 3 23 563 584 562 584 0.92 10 16 0.61 1.7e+02 4.9 1.7 1 23 584 606 584 606 0.89 11 16 0.00038 0.11 15.0 0.3 2 23 613 634 612 634 0.96 12 16 0.00043 0.12 14.8 0.7 1 23 636 658 636 658 0.94 13 16 6 1.7e+03 1.8 1.4 1 23 664 687 664 687 0.89 14 16 6.1e-05 0.017 17.5 0.9 1 23 750 772 750 772 0.97 15 16 4e-05 0.012 18.1 0.7 1 23 778 801 778 801 0.95 16 16 0.021 6 9.5 2.5 1 23 808 831 808 831 0.98
Sequence Information
- Coding Sequence
- ATGGAAACTCACCCGAACTTAGCGCAAAATCGCTTGCATACGAAAGATGGAAGAACCCTGTCGAAAAATTTATGGCAAAGTCTTGCTGCGCGGTTAAATTATGTCGGGCCACCTATTAAGGATTTGGAAACATGGAAAAGGGTATGGTACGATGTAAAAAATACAGCCAAaacaaaatgcaggaaaaaTTACGCCGCAATGAACAAGATTGGTGAAGGACCTTATAAAATATTCCCGCTGAACAACATGGAGCAGCGAGTGATCGATTTGCTGGAACCCAGTTCAGAAAAGGCACGAATACCCAAAAGGAAGAGTGTTCGTTGCCCACAGCCAGCTCCGCAGGCAATCGAAATTGAAGACGATGAAGaagtatttcaaataaattatttagaaGAGAGGGTACCGCAGAAAGTACTTCAAGTATTTCCGCCGGCAAAGAAAACCAAAAGGAGTATGCGGGACAATATTACGGAGTATTTGTCTTCAGCGAAAGGACACGATGACGAAGTGTTAACAACGTTAAGAGAAGTCAAGGATAATttaaaagatttgaaaaatatgtATCGAGATTataATTCTGCTCGTGATTGTGGTTTCGATTGCTTTCGAGGCATAAAAATGGCCGAAGCAAATCCTTTCACGTTTCCCGAGCTCCCTAAAATGGAAGAGAATGTTTTAAATGATGTACAACTTCATTGCGATGAGTGTGATGCTGGACCATTGGACACTGTGAAGTTTTATGAGCATAGGCGAACACACAACAAATATACTATTAAAACAAGTTTAGCACCAAGCGATAGATGCAATTTTTGTCCATTTTGCACATATTTATTTAAGGGACAACACAATTCACGTGCGATTCGCCCAAAAATCTCGAAAACCGATACTAAACTTCTATTAAATCCAGAATGCAAAACTTGCTTGGCTAAGTTTCAAGATATCAATGAATTAGTTGAACATTACAAAGAAGTACACCAGAATTGGTTTCCATTCTTTTATCTATTTGCATCACCTGAATTATTATTAAGAACCAAACCAGCAAAGGACAGGAAGAAAGTACTTCAATGTGATGTTTGTTTGcgtttcttttcaaaaaaatcaaatttaaggGATCATAAATATAAGCATGCTGGTCAAAGGCATTATCAATGTACGTATTGTGATAAGAGCTTCTTCTATCAAATCTCACTTTGGCAACATTCAAAATGTCATGAGAGTTTAGATGCGAAGCCGTATGAATGTGGAGTATGTTTAAAGAGATTCTCAAGGAAGAATTACTTAGTTATTCATCAATACACTCATGATGAGGATAAGTCGTTCCCGTGCAGCTATTGTTCCAAGAAATTTTCAGCTCCTGAATATTTGCGGAAGCATATTAACTTGCATAGTGAAAATTTAAATCATCCCTTAAGATGTGAtgtttgcttcaaaatattttcaactaaCTACAGCCTCAGGCGTCATACAGAACTAATGCATATAAAATCATTAACTGTAGTCATTTACGCTTGCGATATTTGTGATAAGAAATTTCTGAGCGAGGAAAACCATAAGGATCACATAATTAAAACAGCTCACATAGGTGaagaaaaatttcattgtaaacACTGTAGCAAAGCATATGCATTTCCGAAACTACTAGAAGAGCATATACTTTGTGTACATACAGATAAAAAGGTGCCAACATGCATTTACTGTAGTCGGGTATTTCCAAAGTTAACTAATTTGAGAAAgcatattttaaaaaatcataaatgtgATAAATGTCGACGGTTATTTATTAATCGTAATCTTCTTGTACCGCATCGCACCGAACATAATACTTCTAGGCCACAAGTTTGTGTATATTGTGAGAAGAAATTTGAAAATCCCACAGATCTGCTGGAACATTTGAAATTTCACAATCATAAGTGCGATGATTGTCCTAAAACTTTCCCAAAAGAAATTGACTTGATGATCCACAAATATGAGCATGCTGGACAAAAGAAGTATGTTTGCAACAAGTGTCTTAATAGATTTTTAATGTTTGATGAACTAAATGAACACGTAAAACATGTTCATAACAGCGAGAAggaagtttatttaaaaaactccATTACATGCAACGATTTAGAAGAAACGTTAGTAAACGATAATGTAAATAGTCCTTTAGAAACAAATAATAAGTCTGCCTCGTCAAAACAAGATAATGAAATCTTAACCCAGTGGACGGATCAGAAAAAGCCGAAAAATTctgaagaaaagaaatttaattgcgAATTTTGCCCGAAAGCATATCGTGATAAATATTTACTTAGGATACACCTGTATAGTCATACCGGGGAAAACCCATTTCCCTGTAAGGTCTGTGATCAAggttttatgagtttatatcaGTTAAAGAAGCATATGGCAAATAAGCATGGTGCACCGTCAAAGGAATATAAATGCAAGTTATGTAATGAGGAATTTTTAAATGCTTGGAAATTACATAATCATTTACAGAGAAAACATAAGGGAATACGTAATGAGaataaggggccatccataaattacgtcacacgaatttcatga
- Protein Sequence
- METHPNLAQNRLHTKDGRTLSKNLWQSLAARLNYVGPPIKDLETWKRVWYDVKNTAKTKCRKNYAAMNKIGEGPYKIFPLNNMEQRVIDLLEPSSEKARIPKRKSVRCPQPAPQAIEIEDDEEVFQINYLEERVPQKVLQVFPPAKKTKRSMRDNITEYLSSAKGHDDEVLTTLREVKDNLKDLKNMYRDYNSARDCGFDCFRGIKMAEANPFTFPELPKMEENVLNDVQLHCDECDAGPLDTVKFYEHRRTHNKYTIKTSLAPSDRCNFCPFCTYLFKGQHNSRAIRPKISKTDTKLLLNPECKTCLAKFQDINELVEHYKEVHQNWFPFFYLFASPELLLRTKPAKDRKKVLQCDVCLRFFSKKSNLRDHKYKHAGQRHYQCTYCDKSFFYQISLWQHSKCHESLDAKPYECGVCLKRFSRKNYLVIHQYTHDEDKSFPCSYCSKKFSAPEYLRKHINLHSENLNHPLRCDVCFKIFSTNYSLRRHTELMHIKSLTVVIYACDICDKKFLSEENHKDHIIKTAHIGEEKFHCKHCSKAYAFPKLLEEHILCVHTDKKVPTCIYCSRVFPKLTNLRKHILKNHKCDKCRRLFINRNLLVPHRTEHNTSRPQVCVYCEKKFENPTDLLEHLKFHNHKCDDCPKTFPKEIDLMIHKYEHAGQKKYVCNKCLNRFLMFDELNEHVKHVHNSEKEVYLKNSITCNDLEETLVNDNVNSPLETNNKSASSKQDNEILTQWTDQKKPKNSEEKKFNCEFCPKAYRDKYLLRIHLYSHTGENPFPCKVCDQGFMSLYQLKKHMANKHGAPSKEYKCKLCNEEFLNAWKLHNHLQRKHKGIRNENKGPSINYVTRIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -