Tuni065642.1
Basic Information
- Insect
- Thereva unica
- Gene Symbol
- -
- Assembly
- GCA_949987705.1
- Location
- OX465285.1:69178285-69179409[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 7.6e-05 0.022 17.2 0.6 1 23 32 54 32 54 0.96 2 10 4.1e-05 0.012 18.0 1.0 1 23 116 138 116 138 0.97 3 10 0.029 8.4 9.1 1.0 1 23 144 166 144 166 0.93 4 10 0.0003 0.087 15.3 3.1 1 23 173 195 173 195 0.94 5 10 0.00019 0.053 16.0 3.1 1 23 201 223 201 223 0.99 6 10 7.6e-05 0.022 17.2 1.6 2 23 230 251 225 251 0.93 7 10 0.00034 0.098 15.1 5.7 2 23 257 278 256 278 0.96 8 10 0.00025 0.071 15.6 0.1 1 23 284 306 284 306 0.97 9 10 0.0015 0.43 13.1 1.2 1 23 313 335 313 335 0.95 10 10 1.4e-05 0.0039 19.5 1.6 1 21 341 361 341 362 0.96
Sequence Information
- Coding Sequence
- ATGgataaacataaaagattatCATCGGATATAGTTAATGCTAAAACAACAGGATTTCTATGTATAAAAAGAGTCGATTCATCATATTTTCCATATTCATGCGATGATTGTAACAGGAGTTTTACTAGTATGGCTTTATATTTTGCACATAGAGCCCAACATTTAAAGGTATTACTACCGAAAGGTAGGCGAACAAAACATCCCGATGGCTATGCCCGTACACGTAATATATTATTGCAAGGGAAATTTGTTGATGACGAGCAAAATGCCTTGATAAGAGCAGAAATTTTTGATCAGGGTGTTGATCTGTTtggtatacatatattcttaaataattcaaaacgcTATGATTGTAAGATATGCGGTGCAGAATTTAAAAGACGCAGCACACTTGACTATCATTTATATAAGCATAAGCGAAAGAAACCGTATGTTTGTATATTCTGCGAGACAAGATTTATCCGTACGACAAATCTTTATTCACATTTATCGCTACATTTCCGTcagttaaaagaatttaagtGTGATTCATGCCCTAGGTCATTTTATACGAAAACAGCCTTGGAACATCATAAAGGATATCACAATAGAGAAAAACCATATAAATGTGAACTATGTTCAAGAGCATTTTCAGAAATATATTACTTAGAACATCATCGGAAAAGGCATGAAGAATTAAAGACACACATTTGTATTATTTGTAATAAGGgatttaattctaaatttacaTTACAAAAACATATAAGAGAACATAGACAAGATCCACTTATTTGTAAGCATTGTAATAAGAAATTCTTTAATCGTTACTATTACAATAAGCATGTAAAAAATCATACTGAAAAACGTACATACAATTGCGATTTATGCGGTAAAGTATATGGATCTGTAGCTAGCCTTAATGTACATAAAAAAGGTCATGCTAAAGAGAAAATTGTCCATTTTTGTACATTATGTCCAGCGAAATTTATGGATAAATACGGGCTAAAATATCATATGGAAGCGCATGAAGATAATGGAAAATATCAATGTAAAACATGCCAACAGAAATTTGTAAGACCATTTCAACTGAATCGACatctaaaaaataatattatctgTAGGAAAGCGTACGTTATGGATGACTGA
- Protein Sequence
- MDKHKRLSSDIVNAKTTGFLCIKRVDSSYFPYSCDDCNRSFTSMALYFAHRAQHLKVLLPKGRRTKHPDGYARTRNILLQGKFVDDEQNALIRAEIFDQGVDLFGIHIFLNNSKRYDCKICGAEFKRRSTLDYHLYKHKRKKPYVCIFCETRFIRTTNLYSHLSLHFRQLKEFKCDSCPRSFYTKTALEHHKGYHNREKPYKCELCSRAFSEIYYLEHHRKRHEELKTHICIICNKGFNSKFTLQKHIREHRQDPLICKHCNKKFFNRYYYNKHVKNHTEKRTYNCDLCGKVYGSVASLNVHKKGHAKEKIVHFCTLCPAKFMDKYGLKYHMEAHEDNGKYQCKTCQQKFVRPFQLNRHLKNNIICRKAYVMDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01431324;
- 90% Identity
- iTF_01431324;
- 80% Identity
- -