Tuni007192.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Thereva unica
Gene Symbol
PRDM13
Assembly
GCA_949987705.1
Location
OX465281.1:4092139-4119306[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 4.7e-06 0.0014 21.0 2.7 1 23 152 174 152 174 0.96
2 21 3.3e-06 0.00094 21.5 4.5 1 23 179 201 179 201 0.98
3 21 2.3e-05 0.0065 18.8 0.6 1 21 207 227 207 228 0.95
4 21 0.00036 0.1 15.1 0.7 1 23 239 261 239 261 0.96
5 21 9.5e-05 0.027 16.9 2.0 2 23 267 288 267 288 0.98
6 21 0.0028 0.81 12.3 1.9 1 14 294 307 294 309 0.92
7 21 0.00018 0.052 16.0 3.9 1 23 492 514 492 514 0.94
8 21 7.9e-06 0.0023 20.3 3.9 2 23 520 541 519 541 0.97
9 21 0.00041 0.12 14.9 3.9 1 21 547 567 547 572 0.94
10 21 2.8e-06 0.00082 21.7 2.6 2 23 580 601 580 601 0.98
11 21 0.0028 0.81 12.3 1.9 1 14 607 620 607 622 0.92
12 21 8e-05 0.023 17.1 0.2 3 23 826 846 825 846 0.96
13 21 3.3e-06 0.00094 21.5 4.5 1 23 851 873 851 873 0.98
14 21 0.36 1e+02 5.6 0.7 1 20 879 898 879 900 0.84
15 21 1.4e-05 0.0041 19.5 0.9 3 23 917 937 915 937 0.96
16 21 5.3e-06 0.0015 20.8 3.1 2 23 943 964 943 964 0.98
17 21 0.11 31 7.3 0.1 1 20 970 989 970 990 0.92
18 21 0.078 22 7.7 0.2 2 23 1054 1076 1053 1076 0.92
19 21 3.7e-06 0.0011 21.3 1.1 1 23 1091 1113 1091 1113 0.98
20 21 0.00073 0.21 14.1 5.0 1 23 1123 1145 1123 1145 0.98
21 21 0.0013 0.37 13.3 4.5 1 23 1164 1186 1164 1186 0.98

Sequence Information

Coding Sequence
ATGAGAACGTTTTATTCATTCGTGAAACTGGCTGAAAGATCTGACTTGGCTTTGAGGGAACCCTTAGTTGCAGAAGGAAGATACAATGGTCTCAGAGgGATTCCCTGTGAGGAAATTACAATAAGAAACGAGAAGATTGAGGAAAACTCATTCCATTCGCAGCCAAGTGAAAACCCAACTGGATCATCGCTTTATATTCTGGATATTGTGAAGGAAGAACCGCGGATATGCGACAGTACACCAAGTGTTACTGGATTCAACGAAAGTGAAAATTTTGAATCTAATCTAGATTATCCCGAAAGTAGCATAGAAGAACCTGATGCCGTTTTTTCAGATAGCGAGGATGATGTCCCCATCACTTTATTGAGAAGCAGATTGgctaaaattaaggaagaaGCTGATTCTGAAGATATTTCACACGAGGAAATTCCAATAAAAAACGAGAAGATTGCGCACGAATGCGAGATATGCGGCAAAATATTTAGAAGAAAACACAATTTCAAAGTTCATCTGGGAATCCACAACGGGATCAGGCACAAATGCGATCAGTGCGGCAAGGAATTTAAACATATCGATACTCTACGCAGGCACATGCGATGGCACACTAATCCTAAACCGTTCAAGTGCGAAATCTGTGGCAAGTCGCTTTCTACTAAAAGGAGCTACACTACGCACATGGACACATGTCAACTACAGCAATTGGAAAAGCCGAAATTTGATTGCGGAAAATGCGGTAAGAATTTCAGTACAAAGGAGTACCGCGATGCTCATATGGAAAATCATATGGGGATCACGGCCAAATGCGATCAATGCGGCAAGGAAGTTGAACATAGATATAGCTTAAGCAGGCACATGAGAGAGCACAGTAATCCGAACCCGTTTAAGTGTGAATACTGTGGAAAGTCGTTTATTAGGAAATACAGCCAGTCTTACTTGGATTTCTTAAACAAGTGCACGACGCTAAATGCACGCGAAGGTGATAGTCTGCCGCAGAGCCTTTGCTTAGTTTGTGCTAGTGCTATGAGAACGTTTTATTCATTCGTGAAACTGGCTGAAAGATCTGACTTGGTTTTGAGGGAAGCCTTAGTTGCGGAAGGAAGATACAAGGGTCTCAGAGgGATTCCCTGTGAGGAAATTACAATAAGACACGAGAAGATGGAGGAAAACTCATTCCATTCGCAGCCAAGTGAAAACCCAACTGGATCATCGCTTTATATTCTGGATATTGTGAAGGAAGAACCGCGGATATGCGAAAGTACACCAAGTGCTGCTGGATTCAACGAAAGTGAAAATTTTGAATCTAATCTAGATTATCCCGAAAGTAGCATAGAAGAACCTGATGACGTTTTTTCAGATGGCGAGGATGATGTCCCCATCAGTTTATTGAGAACCAGATTGgctaaaattaaggaagaaGCTGATTCTGAAGATATTTCATTCGAGGAAATTCCAATAAAAAACGAGAAGATTGCGCACGAATGCGAGATATGcggcaaaatatttaaaagtaaacACTATTTCAAAATGCATCTGGGAAATCACAATGGGATTATACAAAAATGCCATAAATGCGGCAAGGAATTCAAATATATCACTAATCTACGCAGGCACCTGAGGTGGCACACCAATCCAAAACCGTTTAAATGCGAAAACTGCGGCAAGTCGCTTTCTACTAAAAAGAGCTACACTAAGCACATAGACAAATGTCAACTACATCTACAGCGATTGGAAAAGCCGAAATGCGATCAATGCGGCAAGGAATTTGCACATAGATATAGCTTAAGCAGGCACATGAGAGAGCACAGTAATCTAAGACCGTTTAAGTGTGAATACTGTGGAAAGTCGTTTATTAGGAAATACAGCCAGTCTTTTTTGGATTTCTTAAACAAGTGCACGACTCTAAATGCACGCGAAGGCGATAGTCTGCCGCAGAGCCTTTGCTCATTTTGTGCTAGTGCTATGAGAACGTTTTATTCATTCGTGAACTTGGCTGAAAGATCTGATCTAATGTTGAGGGAAGCCTTAGTTGCAGAAGGAAGATACAATGGTCTCAGAGgCCTTCCCTGTGAGGAAATTACAATAAGGAACGAGAAGATTGAGGAAGAGTCCGAAAATTCTCCCCAGGGCGACACATTTCATTGCCAGCCAAGTAAAACCCCAACTGGATCATCGCTTTATATTCTGGATATTGTGAAGGAAGAACCGCAAGTATGCGAAAGTACATCAAGTGCTACTGAATTCaatgaaagtgaaaattttgAATCTAATCTAGATTATCCCGAAAGGAGCATCGAAGATCCTGATGATGTTTTTTCACGTCGTCTAGCGAGCATTTATACAGAGCATACAGATGCCGAGGATGATGTCCCCATCAGTTTATTGCGAAGCAGATTGgctaaaattaaggaagaaGCTGATTCTGAAGAAATATCCTGCGAGGAAGTAACAGTAAGAAAGGAAAAGATTAGACACGGATGCGAGATATGCGGTAAAACattttctataaaacaaaatctCAACGTTCATCTGGGAAATCACAATGGGATCAGGCACAAATGCGATCAGTGCGGCAAGGAATTTAAACATATCGATACTCTACGCAGGCACATGAGATGGCACACTAATCCTAAACCGTTCAAGTGCGAAATCTGTGGCAAGTTGCTATGTAGCAGAAGAGATCACGCTAGGCATATTGTCGTTTGTAGACGACGTATTATAGCACTGCAATTGGAAAAGCCGAAAACTGATTGCGGAATATGTGGTAAACATTTCAGTAGGAAAGATTACCTTGACGTGCATATGGAAAATCATATGGGGATTACAGCAAAATGCGATCAATGCGGCAAGGAATTTGAACATAGATATAGCTTAAGCAGGCACATGAGATTGCACAATAATCCGAGACCGTTTGTTTGTGAATATTGTGGAAAGTTGCTTGCTAGGAAATCCAGAGCAAATACACACCAAGTTGATGCTGAAATGGAGGTGTTTTCGAATGCCAAAGTTCGTGTGAACAAAGAAGAAGGTAAAAATGAAGTTACAAAACAGGAGCCGCAGGATGTGGTTGCTTTACCCAACAATACTACAACTAGAACTAAtgaaaatgtattaaaacattctgaaaatttaattgctGATAGTAAAAAGGAACCTACGCTTAGATGTTGGCGATGCGGCTCTGAATTTGAGGAGCAAAATGCTCTAAAAGCTCATATATTCCAGTACCATCCAGATGGAGCACTAAATCGATTAAAAGGTCCTGTAAAGCTATTCAAGTGCGATGGCTGTGATAAAGTATATAGGTCTACAAAGTATCTTCTAAAGCATATGATTATGCATGATCATATGGGGAAAGGGCTACTGAACCACGAATGTAAAGTGTGTGGCCTTAAATTTCTCTACCATTCCAACTTAAACAAACATATGCAAAGGCACGAGCGGCGGGCTACGATTGTAAAGATTCAGCAAACGAAAGACACCCGAAAACTATATGAGTGTAAAATTTGTTATAAGCATTTTGTACGGAAAAAGTATTATGATCGTCATGCTAAGATTCACAAAGACATGCAAGACAAGGCGAAGGCCCGACGTGCTGTTACCTCTACAAGATCTTCTTCAAACAATGCCGGCAGACAACATGTAGTCAGACTTGAATCTAGTGCGGCCGAGAGTGTAGAATATATTATAACCGAAATTCTAGAAGATGAAAAAGAATCGGAAGATGGTCAATTTGCACAGGAGGCAGTCGTAAGCACGGGTTCAGATATGGAGCATGTGACAATGAAAATGGAGACAGAAGATGATTTCTGTTAG
Protein Sequence
MRTFYSFVKLAERSDLALREPLVAEGRYNGLRGIPCEEITIRNEKIEENSFHSQPSENPTGSSLYILDIVKEEPRICDSTPSVTGFNESENFESNLDYPESSIEEPDAVFSDSEDDVPITLLRSRLAKIKEEADSEDISHEEIPIKNEKIAHECEICGKIFRRKHNFKVHLGIHNGIRHKCDQCGKEFKHIDTLRRHMRWHTNPKPFKCEICGKSLSTKRSYTTHMDTCQLQQLEKPKFDCGKCGKNFSTKEYRDAHMENHMGITAKCDQCGKEVEHRYSLSRHMREHSNPNPFKCEYCGKSFIRKYSQSYLDFLNKCTTLNAREGDSLPQSLCLVCASAMRTFYSFVKLAERSDLVLREALVAEGRYKGLRGIPCEEITIRHEKMEENSFHSQPSENPTGSSLYILDIVKEEPRICESTPSAAGFNESENFESNLDYPESSIEEPDDVFSDGEDDVPISLLRTRLAKIKEEADSEDISFEEIPIKNEKIAHECEICGKIFKSKHYFKMHLGNHNGIIQKCHKCGKEFKYITNLRRHLRWHTNPKPFKCENCGKSLSTKKSYTKHIDKCQLHLQRLEKPKCDQCGKEFAHRYSLSRHMREHSNLRPFKCEYCGKSFIRKYSQSFLDFLNKCTTLNAREGDSLPQSLCSFCASAMRTFYSFVNLAERSDLMLREALVAEGRYNGLRGLPCEEITIRNEKIEEESENSPQGDTFHCQPSKTPTGSSLYILDIVKEEPQVCESTSSATEFNESENFESNLDYPERSIEDPDDVFSRRLASIYTEHTDAEDDVPISLLRSRLAKIKEEADSEEISCEEVTVRKEKIRHGCEICGKTFSIKQNLNVHLGNHNGIRHKCDQCGKEFKHIDTLRRHMRWHTNPKPFKCEICGKLLCSRRDHARHIVVCRRRIIALQLEKPKTDCGICGKHFSRKDYLDVHMENHMGITAKCDQCGKEFEHRYSLSRHMRLHNNPRPFVCEYCGKLLARKSRANTHQVDAEMEVFSNAKVRVNKEEGKNEVTKQEPQDVVALPNNTTTRTNENVLKHSENLIADSKKEPTLRCWRCGSEFEEQNALKAHIFQYHPDGALNRLKGPVKLFKCDGCDKVYRSTKYLLKHMIMHDHMGKGLLNHECKVCGLKFLYHSNLNKHMQRHERRATIVKIQQTKDTRKLYECKICYKHFVRKKYYDRHAKIHKDMQDKAKARRAVTSTRSSSNNAGRQHVVRLESSAAESVEYIITEILEDEKESEDGQFAQEAVVSTGSDMEHVTMKMETEDDFC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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