Tnob055229.1
Basic Information
- Insect
- Thereva nobilitata
- Gene Symbol
- -
- Assembly
- GCA_963855945.1
- Location
- OY979698.1:88132678-88143782[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.09 22 7.5 1.3 3 23 286 308 284 308 0.91 2 11 5.9 1.4e+03 1.8 0.3 2 23 375 395 374 395 0.91 3 11 1.1 2.7e+02 4.1 1.5 3 21 461 479 459 483 0.92 4 11 0.00061 0.15 14.3 0.3 2 19 505 522 504 524 0.95 5 11 0.018 4.4 9.7 3.2 1 23 542 565 542 565 0.95 6 11 0.097 24 7.4 0.4 1 21 570 590 570 594 0.90 7 11 0.00012 0.03 16.5 1.3 2 23 611 633 611 633 0.95 8 11 0.018 4.3 9.7 0.0 2 21 639 658 638 659 0.94 9 11 0.0098 2.4 10.5 4.1 2 23 774 794 773 794 0.95 10 11 1.4e-06 0.00034 22.6 0.7 1 23 800 823 800 823 0.95 11 11 0.45 1.1e+02 5.3 1.7 1 12 843 854 843 855 0.90
Sequence Information
- Coding Sequence
- ATGCTCGAAGAAGATCTCGAAGATACCCACTTATGTATCAAATGCAGCTCAACAATTGTTGGTATCGAAAATTACATCCAACATCGCAAATCAAACTGTACAGTTAAAGCAACCCGTGAAATAGTCCAAGTCGACCATCCATATGGAGCATTTGACTTCTCTGAAACAACATCCTTTCATAAAACCGAAGAAGttgaaaaaaatccaaaaccACACGAAGTCACCGATACATATGATCTACTATACAATCTTGGTGCTGATGTCTTCTTTTCATCACTCGAACTTCAAAGTAGCTCAAAACGtacaccagcagcagcaacagcaacaactaGCGGCAAACCATCAACGACAAGAGTTTTAACTAGAAAGGCAACAGCAGCTATAATATCAAATCAAGAGCAGGAGCACGAGGATGAATGGATTGAATCGGGAAATAATTCAGAGAACTTAATGAAAGCTGTTCGAGATATAAGTGGTAACAAGAAATGCGATTCATCATTCAAAATTATATCATTTCAACATGATACACCGGAGCAAAGTGAATTTGAAGATGAGGATGATGAGGATTTTGAGGGTGTACCATCACATCATACTGGTGGTAAATGGAAGCCGGATAATTCGCCAACATTGAGAAGTATTGTGCTGAGAAATTCACCAGCTTGGGATGATAGACATCAGTGGGAAATTACTGATGCAGAAAGAACACCAAAGACACAGGATCAGGAAGATTTTGAGCATGATTTGAATCCACCACCTGGACATACTAAAGGAAAATGGGTTCCCGGAACTAAAATCGTCCGACTTGACTTCAAAGAAGAAgttgaaattgaaaagataTACACGCATCAATACTGGTGCAATACCTGCAACAGAAAACTATCATCAAAGCTGCTTTACGAAAAACACTTAAAATCGAATCTTCATGTAAAACGAGCTGAACCTGAACAACATTTAGAACAAGCAACGCTAAAGTCCATAATATATTCAGAACGAGCCAAAAAGCCATCGATATACTTGAATCAAGACATTTACTTAACAGAACAAACCGCCGCCGACGAAAAACCGACCaaagaaagtgaaattttaacaaAAGAAAAGCGAAAAcggcaaaaatattttattaagtgTGAAACATGTAAGGTGCGACTACCAAAATATCTCCTCGGAAAGCATTTAATCTCGCACTATCACTACCGAAGAATGATCCTTAACCCGCCAAAATCGCTCGATATTATTCTTGATAATATGCACCGAATTGTCCTTCAAGCACCGTTTCAGTGTCAACCATGTCGATTTTATGCAAATACCGAAACTGACTTCATAAATCACTGGAACTCAAACGAACATCAAGACGTTAGCGAAGGACCAGGGCGATTTTGGTGTAGCTTCTGCAAGTTCGAATGCGAGGATAACAATCAAATGCGTCGCCATCTCTTGGGTCCGGAGCATAAAGAAATTATCTTAGCTATAAATCGATCTGTTCCAATAACGATCGGAAAGAAGATCATCATTCAATGTAACAAGTGCCAACAGACTTTTCGCTACAATATTGAATTGAAGAAACATGCAGCACACTGCACTTCAGAACCAGTTGGGACAGCATCGAACGAGTATCAATCGAAATTTGTTTGTAGAACGTGTGAGAAAATTTGTAAATCGCGATTATCTTTGCAAAGGCATGAAATAAGGAAGCATCAAGTGAAGAGATTCTTTTGTTCTGCTTGTAAGATTAATTTCAAGACTAAAGATGAGGCTGCTAAGCATAGGAACGCGTTGGCACACAAATTGAAATCGAACTTGCTGAGAAAGAATAGTGCCAGTTTAGCGAGGAAATGCAATAGTTGTGAGAAGATGTTTTCGGATTTGTCGAAATTGAAAGAGCATATCAAAGATAATCATCCGGAAGAAAAGTCATCatgtGCATATTGTGGTGAAAGCTTTATAATACCACAAGAACTTGGAAGACATGTCAGAGATAAAGTATGTCGACCATCGACCTCCAAGGACATGCTGGAAATTTCAATTGCAAGACCAGCAGAAACAGCACAACCTAAAACACCTACATTGTTTGCTACCTCCTCATCTGCAGAAGAGGAAactaaaatcattccagaagtAGCAGTCGAATTTTTAGTAGCTGAAGCAGAACCAAATTCTACAACTGCGCAAAAGACTACCGAAAATTTGGTACCTGATAATGCAGAACCTAATAAGGAGTGGAGATGTCCAAGCTGTTTGTTTGCAACAAACCTAAAAGCAGAGTTCATGTTTCATGAACTTTTACATACAGCTGGCAATGTTGGCTCTAGAACGAAGCTGCCATGTCCaatttgtaataaggaatttcgAAAGCATTCGCTACGGTGCCACATACGACAGCATACAAATGAGAAAGTGTTTGAGTGCAAAGAATGTCCTTTGAAATTTTCCAGAAAGTACAACCTAAAATCTCACATTGCCAATATACACAAGAAGAAGGAAGATGTTGTTGACTGCAAGAAAATTGAAGTTGGAAATGTGAAAAGTTATACATGCGAGACGTGCTCGAAAGTGTTTAATAAGAAGTGa
- Protein Sequence
- MLEEDLEDTHLCIKCSSTIVGIENYIQHRKSNCTVKATREIVQVDHPYGAFDFSETTSFHKTEEVEKNPKPHEVTDTYDLLYNLGADVFFSSLELQSSSKRTPAAATATTSGKPSTTRVLTRKATAAIISNQEQEHEDEWIESGNNSENLMKAVRDISGNKKCDSSFKIISFQHDTPEQSEFEDEDDEDFEGVPSHHTGGKWKPDNSPTLRSIVLRNSPAWDDRHQWEITDAERTPKTQDQEDFEHDLNPPPGHTKGKWVPGTKIVRLDFKEEVEIEKIYTHQYWCNTCNRKLSSKLLYEKHLKSNLHVKRAEPEQHLEQATLKSIIYSERAKKPSIYLNQDIYLTEQTAADEKPTKESEILTKEKRKRQKYFIKCETCKVRLPKYLLGKHLISHYHYRRMILNPPKSLDIILDNMHRIVLQAPFQCQPCRFYANTETDFINHWNSNEHQDVSEGPGRFWCSFCKFECEDNNQMRRHLLGPEHKEIILAINRSVPITIGKKIIIQCNKCQQTFRYNIELKKHAAHCTSEPVGTASNEYQSKFVCRTCEKICKSRLSLQRHEIRKHQVKRFFCSACKINFKTKDEAAKHRNALAHKLKSNLLRKNSASLARKCNSCEKMFSDLSKLKEHIKDNHPEEKSSCAYCGESFIIPQELGRHVRDKVCRPSTSKDMLEISIARPAETAQPKTPTLFATSSSAEEETKIIPEVAVEFLVAEAEPNSTTAQKTTENLVPDNAEPNKEWRCPSCLFATNLKAEFMFHELLHTAGNVGSRTKLPCPICNKEFRKHSLRCHIRQHTNEKVFECKECPLKFSRKYNLKSHIANIHKKKEDVVDCKKIEVGNVKSYTCETCSKVFNKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01432609;
- 90% Identity
- iTF_01432609;
- 80% Identity
- -