Tnob037536.1
Basic Information
- Insect
- Thereva nobilitata
- Gene Symbol
- PRDM15
- Assembly
- GCA_963855945.1
- Location
- OY979696.1:129618466-129620364[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.012 3 10.2 4.0 1 23 61 83 61 83 0.97 2 16 1.3 3.2e+02 3.8 1.6 2 23 129 150 128 151 0.92 3 16 0.0038 0.93 11.8 3.6 1 23 171 193 171 193 0.98 4 16 0.011 2.8 10.3 1.6 2 23 201 222 200 222 0.95 5 16 1.3 3.1e+02 3.9 5.0 1 23 228 251 228 251 0.91 6 16 5.4e-05 0.013 17.6 1.2 2 23 259 280 258 280 0.96 7 16 0.12 29 7.1 4.5 1 21 291 311 291 315 0.91 8 16 0.006 1.4 11.2 5.8 2 23 322 343 321 343 0.96 9 16 0.0011 0.27 13.5 1.5 1 23 372 394 372 394 0.98 10 16 2.3 5.5e+02 3.1 3.7 2 19 400 417 399 421 0.86 11 16 0.0063 1.5 11.1 0.4 1 17 423 439 423 441 0.93 12 16 0.00048 0.12 14.6 0.2 1 23 452 475 452 475 0.96 13 16 0.002 0.49 12.7 0.2 1 23 518 541 518 541 0.92 14 16 0.076 18 7.7 3.6 3 23 549 570 548 570 0.92 15 16 0.23 57 6.2 8.1 1 23 578 601 578 601 0.98 16 16 0.006 1.5 11.2 4.5 1 23 602 625 602 625 0.96
Sequence Information
- Coding Sequence
- ATGGACATGAAACAAGGACCATCCGTTCGTGAGGCAAACACAATAGAAAAGCCTTGGCTGAAATTGGTAAAAAATAATACTTTATTAttaaaagaacaaaattttaatgctGTTAGTAAAAATACGACTATAAGTGATCCTTTTGGTATATTAAATCAACCCACGTGCGAAGAATCACAATTTTTCTGTGCTGAATGTAGAAAGGAGTTTACATCTTTTAAACAATTCTATTTGCATAGAAGACAACATGCTGCCTTAACATGTCCTCAGTCCTATAAAACTAcgaataataaatttaattactgcCCTCTTTGCTTAGATTTAATAGTAGTAAATAAGGATTGGGTAATACAGAAACATAATAAGAAACTTTTTAACTATTTGTAttgtaaaatttgtgaaactagTCCTAAAAGTATaaataagttaaaaaatcaTTATGAATTACACCATCAGAATTTAAATCCATTTCATTATATCTTTTCGCAAGATAATACAGGCGTAGGTGATTTTCattgtaaaatttgtttaaaaaactttcaaaacttaaaattattaaacgATCATGAGAAAACACATTTAGAAATCGAAAAAGTGAAAGAATGCAATATGTGTAATCAAGTTTTTCAATCAAATTATGATCTTACTTTTCATCGGTATACCCATGCTGGTGAAGAGTTATTTAAATGCTGCAAATGCGATTATATATTCTTTATATCTAAATTCTTGCAGGATCATAAAGGCAGTAAACATCCAAAAATTGATACCTCATGCATTTGTGAATATTGCGGTGTAACATTTACTAGTTCAGGTGGATTAAGTTTGCATAAGAAAACTCACAATAAACCAAACATACAATCACGTGATTTATATTCATGCGATACATGCCATTTGAGATTTACAAAATTCTGTCAATTGGAAGAGCATAAAATAAATACTATTCATAAAACCGATGatgtattaaagtgtaaaaaatgttctaaaacattttgctatcaaaaacTTTATGATGAACACATGTTTTCACATGATCCAACTATGAGAAAATGCATTCGGTGTAATGAGATCGTTTCTGGTTATATAGGAacttatttaaaacattttgatAACAAACATCAATGTAAGTCTTGTCCTGCAATATTTAAAGATCGTTTGGCATTAAAACAGCATGAAAAGACACATTTAACTCCATTATCGTCTTGCGAATATTGCCATAAAAGCTTAGAAGATGCTGCTAAATATAGCGAGCACTGTAAATTTCATCGTTATGTTTGCTTATTATGCCGAAAAACATTTCGTAACAGCTCAGCATTAATGTTTCATGATTTTCTTGTTCATGCATCATCAAAAAAATATCCATgcacaaaatgtagcataaggTTTTATAAGAAAGAACTATTAGAAGAGCACTTAGAAATAGCACATTATACCATCGAAAATTCTTTAAAAcaattcaaaattgaaaaaatcccGAATATTAAGTCAGTACCGGTTTATATGAATACTGTTGGTTTACCTGATCATAATTTACTAGAAAATGATTTGTTGCCGTATGCCTGTAAATattgtgaattaaaattttctaatttagaAAGTATAAAGGTTCATTTAATTGATATTCATATAAGTCCTTTTGAAGCTATTTGTAATATTTGTaacgaaaattttcatttaagtacttatttaaaaaagcatAAGGAGCATGTTCATGCAATAAAACCAATAAAGCGATATAAATGCAAGGTTTGTTGTAAAAGGTTTACAACACGAATCCATAaagaaaaacatgaacaaaCAACGCACTATTATTGCAAATTGTGTAACAAAGTATACTTTAAGTTTGGATATTTTAGAAGGCATTATAAAAATGTACATTATATCAATAAAACTCCttcttaa
- Protein Sequence
- MDMKQGPSVREANTIEKPWLKLVKNNTLLLKEQNFNAVSKNTTISDPFGILNQPTCEESQFFCAECRKEFTSFKQFYLHRRQHAALTCPQSYKTTNNKFNYCPLCLDLIVVNKDWVIQKHNKKLFNYLYCKICETSPKSINKLKNHYELHHQNLNPFHYIFSQDNTGVGDFHCKICLKNFQNLKLLNDHEKTHLEIEKVKECNMCNQVFQSNYDLTFHRYTHAGEELFKCCKCDYIFFISKFLQDHKGSKHPKIDTSCICEYCGVTFTSSGGLSLHKKTHNKPNIQSRDLYSCDTCHLRFTKFCQLEEHKINTIHKTDDVLKCKKCSKTFCYQKLYDEHMFSHDPTMRKCIRCNEIVSGYIGTYLKHFDNKHQCKSCPAIFKDRLALKQHEKTHLTPLSSCEYCHKSLEDAAKYSEHCKFHRYVCLLCRKTFRNSSALMFHDFLVHASSKKYPCTKCSIRFYKKELLEEHLEIAHYTIENSLKQFKIEKIPNIKSVPVYMNTVGLPDHNLLENDLLPYACKYCELKFSNLESIKVHLIDIHISPFEAICNICNENFHLSTYLKKHKEHVHAIKPIKRYKCKVCCKRFTTRIHKEKHEQTTHYYCKLCNKVYFKFGYFRRHYKNVHYINKTPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -