Basic Information

Insect: Thereva nobilitata
Gene Symbol: SCRT1
Assembly: GCA_963855945.1
Location: OY979696.1:2798662-2799804[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 1.9e-07 4.5e-05 25.4 1.7 1 23 224 246 224 246 0.99

2 5 0.00025 0.06 15.6 0.1 2 23 256 277 255 277 0.98

3 5 2.2e-06 0.00054 22.0 0.5 1 23 281 303 281 303 0.97

4 5 5e-08 1.2e-05 27.2 0.2 1 23 309 331 309 331 0.99

5 5 3.1e-05 0.0076 18.4 2.6 1 21 337 357 337 358 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	1.9e-07	4.5e-05	25.4	1.7	1	23	224	246	224	246	0.99
2	5	0.00025	0.06	15.6	0.1	2	23	256	277	255	277	0.98
3	5	2.2e-06	0.00054	22.0	0.5	1	23	281	303	281	303	0.97
4	5	5e-08	1.2e-05	27.2	0.2	1	23	309	331	309	331	0.99
5	5	3.1e-05	0.0076	18.4	2.6	1	21	337	357	337	358	0.95

Sequence Information

Coding Sequence: ATGACTGCAGCCCCCACCACATCGCCTGCTTCAAAGCTGACACGAAAGTCGTCCATGAAGTCGGAAGGAATTCCGGAACAAGTAATTTTTTATGCACCGCCAGCAAATTatttagaaaaacgaaaaacGGATGCAACAAgtcaaaatcaaataaatcctgTCTACCGTGAGAGAAGCATCGAGGAAACGGAAGCTGCCCATGATCTGCTCTCATTGTCGCAAAGTCTGCCGCCGCTTCCAGCGCCCTGTGTTGTCACCATTCTCCATCAGGAGGAGGCGCCTAATCAATACGTGATCGCTAATTCGCCTGTAATGCAGGAAATATCGAATtcatcaaataataataaaacgaaTCCGGATCGAAACGGATATTACGAGACTGCGAATAAGCCGAAGATACGCTACAGTTCTTATGAAAGCAACGCAGAAAACTGCTCCCCGCTGACGCCACCAACATCCGAAAATTCATCGGATATCGAAGTAGAAATAATATCGTCCTCTTCTGAATCGTCGAATCAATCGCATATATTATCTCACGATGAGTTGTGGAACCCCGAACTGCTGAAGATTCGAAGAGAGAAGCTCTTCATTGTCGACGGCCGCTCGAAGAACCGAAAAAATCCGGAAACTCAACCGAATGGCACCAAAACACCAAAGAAACGAGGATGCTACAAATGCTCGGAATGCGGACGGCAATACGCGACATCCAGTAATCTATCTAGGCACAAGCAAACCCACAGGAGCCTAGACTCTCAGTCAGCCAAGAAGTGCAATACCTGCGGGAAGGCCTACGTATCGATGCCGGCTCTGGCGATGCACCTACTCACACACAAGCTCAATCACAGCTGCGAAATTTGCGGGAAGCTCTTCTCGCGGCCATGGCTGCTTCAAGGACACTTGAGATCTCACACCGGTGAGAAGCCGTATGTGTGTGCTCTATGCTCAAAGGCTTTCGCTGATCGGTCTAATCTGCGCGCACACATGCAGACACACTCGTCGgacaaaaattacaaatgtCACCGCTGCACCAAGACTTTCGCTCTCAAGTCCTACCTCAACAAACATCTGGAGTCCTCATGCCTTAGGGACAAGGAGTTTGCCGTTAGCAGCGACGATAACGACGAGGACATCGTCATCACATAA
Protein Sequence: MTAAPTTSPASKLTRKSSMKSEGIPEQVIFYAPPANYLEKRKTDATSQNQINPVYRERSIEETEAAHDLLSLSQSLPPLPAPCVVTILHQEEAPNQYVIANSPVMQEISNSSNNNKTNPDRNGYYETANKPKIRYSSYESNAENCSPLTPPTSENSSDIEVEIISSSSESSNQSHILSHDELWNPELLKIRREKLFIVDGRSKNRKNPETQPNGTKTPKKRGCYKCSECGRQYATSSNLSRHKQTHRSLDSQSAKKCNTCGKAYVSMPALAMHLLTHKLNHSCEICGKLFSRPWLLQGHLRSHTGEKPYVCALCSKAFADRSNLRAHMQTHSSDKNYKCHRCTKTFALKSYLNKHLESSCLRDKEFAVSSDDNDEDIVIT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01432527;
90% Identity: iTF_01432527;
80% Identity: -