Basic Information

Gene Symbol
AtMg00710
Assembly
GCA_963855945.1
Location
OY979696.1:93348315-93360714[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.00037 0.089 15.0 5.1 2 23 235 256 234 256 0.93
2 10 2.7e-06 0.00066 21.7 3.5 2 23 262 283 261 283 0.96
3 10 2.2e-05 0.0054 18.8 1.8 3 23 291 311 289 311 0.96
4 10 3.5 8.5e+02 2.5 0.7 2 23 325 348 324 349 0.87
5 10 0.00031 0.076 15.2 0.4 1 23 356 379 356 379 0.95
6 10 7.7e-05 0.019 17.1 5.2 1 23 393 415 393 415 0.95
7 10 1.4e-05 0.0034 19.5 3.2 1 23 421 443 421 443 0.98
8 10 1.5e-05 0.0037 19.4 2.0 1 23 449 471 449 471 0.97
9 10 2.7e-05 0.0066 18.6 3.3 1 23 477 499 477 499 0.96
10 10 0.00026 0.062 15.5 2.3 1 23 505 528 505 528 0.96

Sequence Information

Coding Sequence
ATGAATCGTACCATTATGAAAAAAGTGCGATGCATGCTCATAGAAAGCGGTTTGGGTCGAAATTTTCGGGCAGAGGCAGCAATGACAGCGGTGTATTTGATTAACCATCACACATCACACCAGAAGAACGTTGGTGAAATACAAAGCCAAATCTATCATCTCTACGTGTGTTTGGTTGCAAGGCCATGGCCTAACATACCGAAAGTGCAACGAAATAacttggctgaaaaatccaacgTATGCATATTCATGGGATACAGCGAACAAACAAAAGGATTTCGACTATACAATCCAAATACCAGAAAGGTAACGAAGGATGACGGATTAACTGATGGAATATGTGTTAAATGCACACGTTCTCTAGTTGAAGCACATAATATAAGGAAAAAGTCGATTAGatctaataaaattttaagaaaacgtTTGGGTCTTGTGTGTACGGTTGAGGATCCGACTAATGATTTACCACATAAATCATCAGAAATCAACAAATTACAAGAAGGCAGAAGCTTAGAGGACCTATTAAATGAAAACAAGGTTAATGTGAAAAGGTctaaacattttaataaaaaaaagaattcatcACTACCAGAATGGGAAGTTGAGAAACAAGTGAATATCGAAAGTACAAACAATGACCATGATTCTGAACAAGATATTGTCCAAGATGATCCTTCACAAACTGTTACAGGACCTGATTTGCAGTGTAAGTACTGTCATAAAACATTCTACAAAAAAATCTACTTAACTAGACATgaatattatcataaaataaagaaaacaaaatgtcCAATTTGTTCTCGTGAATTTACGCATAAATCGAATCTTAAGCGGCATTTTTCAGTCCATAAGGAACGAAATGAGCTAGCATGCGATAAATGTGGTGAAACATTCACCGAATCACATCATCTCTACGATCATATCAAAATTCACGATGAAACAGCTagtgatgaaaaattaaaatacatccTAGAATGCGAAAATTGTAGTGATTACAAAACGGAGTCTCTATCAAGCTACTTAGCTCACATGAAGGATGAACACCATATAGAAATACAGAAACCTTTTAAGTGTAAAACATGTGGACTACAATTTGCATCTAAACAGGGAATGCTTCGGCATATCGACAATATCCATGAAGATAATCGAAGAAATCTTAGGAAACGTGATAAGAAATTTCTTTGTAATACATGCGGAAAGAAATTTCATACTAATTTTCACCTTGAAGTTCATGTAAGATCACATACAGGCGAGAGACCATTTAAATgcaaatattgtgaaaaatcaTTTGCACAATTTTCTGGCCTAAAAATGCATACGTTTACCCATACTGGTGAGAAGCCATTTGATTGTAAAGTATGTGGAAAGAGATTCAATCAATATGGTCATGTACGAGAGCATTTATTAACGCACACCAATGAGAAGCCACATATTTGCCAAATTTGCCATCATTCGTTTCGAGTTAAGGGTAATCTAACTGCGCATATGGTTGTTCATACGGGAAAGAAGCCCTATAATTGCGATATTTGTAATAGAGAATTTATGCAACAAACTAAGCTTAAGGCTCATGTGGAAAAATGTCATGCTATTAGAAATCTTGAAATTGAAGTAGGAAACTCGAATAGTTCTTGtgtaattataagaaatgtctAG
Protein Sequence
MNRTIMKKVRCMLIESGLGRNFRAEAAMTAVYLINHHTSHQKNVGEIQSQIYHLYVCLVARPWPNIPKVQRNNLAEKSNVCIFMGYSEQTKGFRLYNPNTRKVTKDDGLTDGICVKCTRSLVEAHNIRKKSIRSNKILRKRLGLVCTVEDPTNDLPHKSSEINKLQEGRSLEDLLNENKVNVKRSKHFNKKKNSSLPEWEVEKQVNIESTNNDHDSEQDIVQDDPSQTVTGPDLQCKYCHKTFYKKIYLTRHEYYHKIKKTKCPICSREFTHKSNLKRHFSVHKERNELACDKCGETFTESHHLYDHIKIHDETASDEKLKYILECENCSDYKTESLSSYLAHMKDEHHIEIQKPFKCKTCGLQFASKQGMLRHIDNIHEDNRRNLRKRDKKFLCNTCGKKFHTNFHLEVHVRSHTGERPFKCKYCEKSFAQFSGLKMHTFTHTGEKPFDCKVCGKRFNQYGHVREHLLTHTNEKPHICQICHHSFRVKGNLTAHMVVHTGKKPYNCDICNREFMQQTKLKAHVEKCHAIRNLEIEVGNSNSSCVIIRNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01432483;
90% Identity
iTF_01432483;
80% Identity
-