Tnob018145.1
Basic Information
- Insect
- Thereva nobilitata
- Gene Symbol
- -
- Assembly
- GCA_963855945.1
- Location
- OY979694.1:232537633-232544024[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00059 0.14 14.3 1.4 3 23 235 255 234 255 0.96 2 10 2.2e-05 0.0054 18.8 5.4 1 23 260 282 260 282 0.98 3 10 0.019 4.6 9.6 1.9 1 20 288 307 288 309 0.94 4 10 1.1e-06 0.00026 23.0 0.5 2 23 325 346 324 346 0.95 5 10 4e-06 0.00097 21.2 2.9 2 23 352 373 351 373 0.97 6 10 0.39 94 5.5 0.2 1 13 379 391 379 392 0.85 7 10 0.0047 1.2 11.5 1.1 2 23 463 484 463 485 0.94 8 10 1.8e-06 0.00044 22.3 1.2 1 23 500 522 500 522 0.98 9 10 4e-05 0.0097 18.0 2.9 1 23 532 554 532 554 0.97 10 10 0.00029 0.071 15.3 6.5 1 23 572 594 572 594 0.98
Sequence Information
- Coding Sequence
- ATGGATACTCAATGCCGGGTTTGTATTAAAAAGGCAGCAAAATGCTTCTCATTAAGTTCTAAAATCGAAAATTCATCAAACCTGTCGTTCTTGGATTTATTAAACAAGTGCACAACTCTAAATGCACGCGAAAGTGATAGTCTGCCGCAAAGCCTTTGCTCAGTTTGTGCTAATGCTATGAAAACGTTTTATTCATTCATGAAACTGGCTGAGAAATCCAATCTAATTTTGAGGGAAGCATTGAAGAATTTGATTGCAGAAGGAAGATACAATGGTAACGGAGAAATTCCTTGTGAGGAAATTGCAATAAGAAACGAGAAGATTGAGGAAGAGTCTGAAGATTTTACCCAGGACGACTCATTTCATTGTCAGCCAAGTAAAAACACAACTGGATCATTACTTTATATTCTGGATATTGTGAAGGAAGAACCGCGAGTATGCGAAAGTACATCAAGTCTTACTGGATTCAATGAAGGTGAAAATTATGATTCTAATCTTAATCATCCGGAAAGGAGCATCGAGGAATCTGATGACGTTTTATCACATGGTCTAGCGAGCATTTATAGAGAGCATACAGATACCGAGGATGATGTACCAATTAGTTTATTGAAAAGGAGATTGGCTAAAATTGAGGATGAAGATGATTCTCAAAGAAATTCTTGCGAGGAAATAGCAACAAAACACGAGACGATTGGGCATGGATGCCATATATGCGCTaaaacattttcattaaaacaaaatctcAAAATCCATCTGGGAAATCACAATGGGATTGGACACAAATGCGATCAGTGCGGCAAACAATTTAAACATATCAATACTCTACGCAGGCACATGAATTGGCACGCTAATCCTAAACCGTTCAAGTGCGAAAACTGTGGCAAGGCGCTTTGTAGTAAAAAGGATCACACTAGGCATATTGACATTTGTAAACGACGTAGTATAacacagaaattaaaaaaaccgaaaattcaTTGCGGAATATGTGGTAAAAATTTCAGTAGACAAGATTACCTCGAGGTTCATATGGAAAATCATATGGGGATTACAACAAAATGCGATCAATGCGGCAAGGAATTTGAACATAGATATAGTTTAAGCAGGCACATGAAATGGCACAATAATCCAAGACCGTTTAATTGTGAATACTGTGGGAAGCCGCTTGCTAGGAAACCCAGAGCAAATACACAACAAGTTTATGCTGAAATGGAGATGTTTTCAGTCCCCGCAGTTCGTGTGATCAAAGAAGAAGATAAAAATGAGTTTGCTGAACAGGAGTCGCAGGATATGGTTACTATACCCAACAATATTCCAACTTGGACTAATGAAACTATATTCAAAACTTCTGAAAATTTGATTATTGATAGTAAAAATGAATGTAGCCCTAAATGTTGGCGATGCGGCCTTAAATTTGAAGAGCAAAATGCTTTAAAAGCTCATATATTCCAGCACCATCCAGATGGAGCACTAAATCGATTAAAAGGTCCTTTAAAGCTATTCAAGTGCGATGGCTGTGATAAAGTATATAAATCTACGAAATATCTTTTAAAGCATATGATTATGCATGATCATATGGGAAAAGGGCTATTAAACCACGAATGTAAAGAGTGTGGCCTTAAATTTCTCTATAATTCCAACTTAAAAAAACATATGATTAAGCACGAACGGCGTACAGTGATTAAGCCTCAGCTAACGCAAGACAGACGAACACTATATGAGTGTAAAATTTGCCATAAGCATTTTGTACGGAAAAAGTATTTTGATCGTCATGCTAAGATTCATAATGACAATACTATCAACAAGACGATGGACCGACGTGTTATTACCTCTACAAAACCTTCTTCAAACAAAGCTGGTAGACAACACATAGTCAGACTTGAATCTAGTGCGGCCGAGAATGTAGAATATATTATCACTGAAATTCTAGAAGTTGAAAAAGAATCGGAAGATGGTCAATTTGCACAAGAAACAGTCGTAAGCACGGGTTTAGATATGGAGCACGTCACAATGAAAGTGGAGAAAGAAGTTGATTTCTATTAA
- Protein Sequence
- MDTQCRVCIKKAAKCFSLSSKIENSSNLSFLDLLNKCTTLNARESDSLPQSLCSVCANAMKTFYSFMKLAEKSNLILREALKNLIAEGRYNGNGEIPCEEIAIRNEKIEEESEDFTQDDSFHCQPSKNTTGSLLYILDIVKEEPRVCESTSSLTGFNEGENYDSNLNHPERSIEESDDVLSHGLASIYREHTDTEDDVPISLLKRRLAKIEDEDDSQRNSCEEIATKHETIGHGCHICAKTFSLKQNLKIHLGNHNGIGHKCDQCGKQFKHINTLRRHMNWHANPKPFKCENCGKALCSKKDHTRHIDICKRRSITQKLKKPKIHCGICGKNFSRQDYLEVHMENHMGITTKCDQCGKEFEHRYSLSRHMKWHNNPRPFNCEYCGKPLARKPRANTQQVYAEMEMFSVPAVRVIKEEDKNEFAEQESQDMVTIPNNIPTWTNETIFKTSENLIIDSKNECSPKCWRCGLKFEEQNALKAHIFQHHPDGALNRLKGPLKLFKCDGCDKVYKSTKYLLKHMIMHDHMGKGLLNHECKECGLKFLYNSNLKKHMIKHERRTVIKPQLTQDRRTLYECKICHKHFVRKKYFDRHAKIHNDNTINKTMDRRVITSTKPSSNKAGRQHIVRLESSAAENVEYIITEILEVEKESEDGQFAQETVVSTGLDMEHVTMKVEKEVDFY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -