Tnob037538.1
Basic Information
- Insect
- Thereva nobilitata
- Gene Symbol
- -
- Assembly
- GCA_963855945.1
- Location
- OY979696.1:129641725-129649142[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.2 5.5e+02 3.1 0.1 1 23 21 43 21 43 0.68 2 19 0.018 4.3 9.7 1.2 1 23 92 115 92 115 0.96 3 19 0.14 35 6.9 3.7 1 23 135 157 135 157 0.98 4 19 1.1e-05 0.0026 19.8 0.7 3 23 163 183 161 183 0.96 5 19 0.00056 0.14 14.4 2.7 1 23 191 213 191 213 0.96 6 19 4.8e-05 0.012 17.8 0.4 1 23 219 241 219 241 0.96 7 19 0.00017 0.041 16.1 0.2 2 23 250 272 249 272 0.96 8 19 0.001 0.24 13.6 2.4 1 22 281 302 281 305 0.91 9 19 0.0073 1.8 10.9 0.9 2 23 312 333 311 333 0.96 10 19 6.5 1.6e+03 1.6 1.6 3 23 341 362 339 362 0.88 11 19 0.0002 0.05 15.8 0.1 1 23 362 384 362 384 0.97 12 19 0.0054 1.3 11.3 1.7 1 23 390 412 390 412 0.96 13 19 0.019 4.7 9.6 1.7 1 23 414 436 414 436 0.95 14 19 0.022 5.5 9.4 2.1 1 23 442 465 442 465 0.96 15 19 0.027 6.5 9.1 1.5 1 23 505 528 505 528 0.94 16 19 0.00014 0.034 16.3 3.6 3 23 536 557 534 557 0.95 17 19 0.013 3.1 10.2 3.4 1 23 565 587 565 587 0.97 18 19 1.9e-05 0.0046 19.0 0.2 3 23 595 616 593 616 0.95 19 19 0.011 2.6 10.4 0.5 1 23 624 646 624 646 0.98
Sequence Information
- Coding Sequence
- ATGAAAAAGGAAGAAACAACAAAAGATAGTAAACCTGAGCTGTTGAGATCATTATCGATATATTCTTGTGATGACTGTGGTTTAGAAATGCCGACATATCTGCCATTTGTTTTGCACAGAAATGTCCATTTAAGAAATGCATGCCGAACTAACAGTCCCGATGATGTGAATGTAGAAAATTGTTACTATTGTAAAACGTTTTTTCGCGTTGAATATGATTCTTGTCAGAGAAAGATGGAAATCATTAAAATGGACGTTCCTAAGATGGAAACACACGAATGTGAATTTTGTTCTGTAAAATTTAGCGATTACGCATTTCTTTTAGATCATTACAACAGTGTCCATAGTGATAACACTTCTAGCAGCATTGTTATACCAGATATAAAGCCAAACTTAGATTTATATCGATGCCAGACTTGCAAGAAGAATTATTTAGGAGCAGAATCTTACCGAAAACATATGTTGCACCATGCTGAAAAGCTAGATTGCGAGCTATGTGGGAAGCAGTTCCCTCATCCAAGAGCCTTGCGAAGACACGTTCAAAGGCATGCAGCGTTTTCGGCAAAACTATTTGAATGTAATATGTGCTTTAAGAATTTCACTAAAAAGAAGACACTTGTAGCCCATCGGTACTTGCATGCTGGCGAAAAGCCATATAAGTGCGAATTATGTGATAGATCTTTCAGTGCTGCAGAGACATTGAAGAGTCATTTAGTTTATCATGAAGATACTGAAGATAATCCATTGAAATGTGAATGGTGCGGGATTATATACTCCTCGGGTAGCTCATTAAGAACACACATTCAACGGAAACATGTTAATTGTAAAATTCTTATGGTATTCACCTGTGATTTATgtgaaatgaaatttaaaaagaaacaagaTTTAGAACATCATTTAGAAAGAACTTTGCATACAGCTGATAATACTCTTAAGTGCGTAGACTGTAGTAAAATGTTTCCGTATCAAAGTATCTTAAATTATCATCGGTTTACTCACGATGGAGCTAATGTACTTACGTGTATATTTTGCTTTAGGAAATATCCTAGATTGCAGTCATATCTGCATCATATTACTAACTTTCATAAGTGTGATATTTGCCCACAAGGGTTTAGATATAAAGACGATGTGGACGCTCATATTAAAGAGCATTTAAATGAAACTAAACATATTTGCGTATATTGCGAGAAAATCTGTGAAACTTCAAAGGACTTAATCGATCATGTTAAACTACATAATTTTCAATGTGCtgtttgtaataaaatatttatgaaagaATATACTTTTAGTATACACAGATTTCAACATTTCCCTGAGAAAAAATTCAACTGCACGAAATGCTTAAGTCGCTTTGATCGtccacaatttttaaaaaatcatttaaaatacGCTCATGGTGAATTTGAATATAATGCTGAAAATAATATCGAcagtaatataataaattcaTCAATAAATAAAGAATCGAATACAAATGAACCCGAACATATATTCCTACCAGAAGAAAACACCTATCGATGTAAATTTTGTACgaagaaatatcaaaatttattacaaGTCAAAAATCACATTATAGAAGATCATATAAAACCACTAGAAGATATATGTGAATTTTGTAACAaaacatttacaaaattatCAGATTTACACAAACATAAAAGAGAATTCCACTTGAAGCCAGatgtaaaacaatttaagtGTGATTTATGCGAAAAGGCATTCTTTAAAATTCACGCTCTACGATATCACAAACAAAATCATTCCGGAGAGAAGCCATTTGGTTGTCCAACCTGTGAGAAGAATTTCGCTAGACCATACTTACTAAAAAGACATATTGAGCAAATGCATACTCCAGATGATTTGAAGACGTTCAAATGTAACTTCTGCCCTAAGGGGTTCTGGGCCAGGTATGATTGGGAGCAACATGTGAAAACACATGTTAGTGTTTCGAAAAAAGCTATTGGAGATATACTTAATACGTTTCTAGGTTTCACGTATCTACACAAATTCGATAACTTTAAGCAAGCGTTTACTTCATCAGCAGCTGTTGATCTTGGAATGACTGGGAGCGTTTGCCGAAAATCGCCGGCTAGCAGAATCATCGTACCTCCAAAAAGGTTCTGA
- Protein Sequence
- MKKEETTKDSKPELLRSLSIYSCDDCGLEMPTYLPFVLHRNVHLRNACRTNSPDDVNVENCYYCKTFFRVEYDSCQRKMEIIKMDVPKMETHECEFCSVKFSDYAFLLDHYNSVHSDNTSSSIVIPDIKPNLDLYRCQTCKKNYLGAESYRKHMLHHAEKLDCELCGKQFPHPRALRRHVQRHAAFSAKLFECNMCFKNFTKKKTLVAHRYLHAGEKPYKCELCDRSFSAAETLKSHLVYHEDTEDNPLKCEWCGIIYSSGSSLRTHIQRKHVNCKILMVFTCDLCEMKFKKKQDLEHHLERTLHTADNTLKCVDCSKMFPYQSILNYHRFTHDGANVLTCIFCFRKYPRLQSYLHHITNFHKCDICPQGFRYKDDVDAHIKEHLNETKHICVYCEKICETSKDLIDHVKLHNFQCAVCNKIFMKEYTFSIHRFQHFPEKKFNCTKCLSRFDRPQFLKNHLKYAHGEFEYNAENNIDSNIINSSINKESNTNEPEHIFLPEENTYRCKFCTKKYQNLLQVKNHIIEDHIKPLEDICEFCNKTFTKLSDLHKHKREFHLKPDVKQFKCDLCEKAFFKIHALRYHKQNHSGEKPFGCPTCEKNFARPYLLKRHIEQMHTPDDLKTFKCNFCPKGFWARYDWEQHVKTHVSVSKKAIGDILNTFLGFTYLHKFDNFKQAFTSSAAVDLGMTGSVCRKSPASRIIVPPKRF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01432464;
- 90% Identity
- iTF_01432464;
- 80% Identity
- -