Tnob018134.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Thereva nobilitata
Gene Symbol
-
Assembly
GCA_963855945.1
Location
OY979694.1:232470800-232475404[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 2.4e-05 0.0058 18.7 3.6 1 23 297 319 297 319 0.97
2 16 0.0012 0.29 13.4 1.4 1 21 325 345 325 346 0.95
3 16 9.4e-06 0.0023 20.0 5.4 2 23 358 379 357 379 0.98
4 16 0.15 37 6.8 2.4 1 19 385 403 385 404 0.89
5 16 0.0011 0.27 13.5 0.2 3 23 439 459 438 459 0.94
6 16 3.3e-06 0.00081 21.4 3.1 1 23 464 486 464 486 0.99
7 16 0.0059 1.4 11.2 0.2 1 20 492 511 492 513 0.94
8 16 1.3e-05 0.0032 19.6 1.3 2 23 525 546 525 546 0.97
9 16 0.00087 0.21 13.8 6.9 1 23 551 573 551 573 0.97
10 16 0.00034 0.082 15.1 0.2 1 20 579 598 579 600 0.95
11 16 5.5e-05 0.013 17.6 1.0 2 23 612 633 612 633 0.97
12 16 0.0045 1.1 11.6 11.1 1 23 638 660 638 660 0.98
13 16 6.2 1.5e+03 1.7 4.3 1 20 666 685 666 687 0.87
14 16 7.6e-05 0.018 17.2 2.5 2 23 697 718 696 718 0.96
15 16 0.095 23 7.4 2.8 2 23 724 744 723 744 0.97
16 16 0.0025 0.6 12.4 0.7 1 16 750 765 750 767 0.89

Sequence Information

Coding Sequence
ATGGTTTATATTGATTTACAGGAAGAGTTTGAAGATTTTAACCAGGGCGACACATTTCATTGTCAGCCAAGCAAGAACTCAACGGAAAAACAACTTTGTATTTTGGATATTGTGAAGGAAGAATCACGCACAACAGAGAGCACATCAATTGTTGATGTGAAAAATGCTGGAATTAAcgaaacagaaaaatttcactcTAATCTTTACCATCCGGAAGGGAACATCGAGGGACTTGATGACATTTTATTGGGCGTAGATCGTCATCTTACAAGCATTGATGCAAAGCATTACGATTCTGAGGATGACGTACCAATTAGTTTACTGAAAAGTAGATTGGCTAAAGATGAGGATGGAGCTGATTCTCAAAGTAACTCTTTACCTGAAGCATTTTGCATCCCTTCTAACGTGCAAGGAGACTCATTTCATTGTCAGCCAGATGAATATTCAAGTGGATCGTCGCTTTATATTCTGGATATTGTGAAGGAAGAACCACGCTTGTCCGAAAGCACCTCAATTGTTGCTGTTAAAGATGCCGAAATCGACAAAGGTGAATCTAATATTAATCATCCGGAAAGCAGCATCGAGGAACCTGATAACGTTTTATCGCGTAGAGATGGTCGTCGCCTAGCGATCAATTATACCAAGCCTATTGATTCTGAGGATGACGTGCCCATTGATTTACTGAAAAGTAGACTGTATAAAAATGGGGATGAAACTGATAACGTTTTATCACGTAGAGATTTTCGTCGTCCAGCGATCAACTATACCAAGCTTATTGATTCTGAGGATGGCGTGCCCATTGATTTACTGAAAAGTATACTGTATAAAAATGGGGATGAAACTGAATCTCAAAGTAAAGTTCACCTGGAAATTCACAAGGGAATTCGACACAAATGCAATCAGTGCGACAAGGAATTTACACATATAAATGCTCTACGCAGGCACATAAATTGGCACGCTAATCCAAAACCGTTCAAGTGTGAAAACTGTGGAAAGCTGCTTTGTAGTAAAAATGAATACACTAGACATATGGAGATTTGTAAACGTCGAAGTAAACCACAGCAATTGAATAAATGCGATCATTGCGACAAGGAATTTCGAAGCATTTATAATCTACACAAGCACATGAGATTGCATAAGAATGCAAAATCGTTTAAATGTGGAAGCTGTGGCAAGTTGTTTCGTCGTAAAGACCTTTGCATTAAGCATAATGTCATTTGTAAACGTCGAAGTAAACCACAGCAATCGTGTAAGCCTCAACCCATTCATAGTGAACTGaaacaacaaattttattaCCTGGTAAGAAGGCTGCATGCGAAATATGCGGTAAACAATTCCGTCAAAAAGCATATCTCGATTTTCATATGGATATTCACAAAGGAATTCGATATAAATGCGATCAGTGCGGCAAGGAATTCAAAACCCGCGTTTCTTTAAGAGGCCACATGCACCGGCACACTTTAACAGAAAGGTATAAGTGTGAAGAATGTGGGGAGTTCTTTGCTTGGAAACGCTCCTACAATAAGCATTTGGACATATGTAAAGGTGCACGACAACCGAAAACTAAACCTAAATGTGAAATATGCGGTAAACAATTTCATCGAAAAGCATACCTCAATCTTCATATGGACATTCACAAAGGAATTCGACACAAATGCGATCAGTGCGGCAAGGAATTTAAAACCCGCAATTCTTTAAAATGCCACATGAAACTGCACACTTTAACAGAAAAGTATAAGTGTGAAGATTGTGGGGAGTTCTTTGTTTGGAAAAGTTCCCTCACTAAGCATGTGGACAGATGTAAAGGTCCACCGCAACCAAAAACTAAACCTGAATGTAAAATATGCGGTAAACAATTTCATCGAAAAGCATACCTCGATCTTCATATGGAAATTCACAAAGGAATTCGACACAAATGCCATGACTGCGGCAAGGAATTTAAAACCCACATTTCTTTAAAATGTCACATGAAACGGCACACTTCTACAAAATCGTATAAGTGTGAAAAATGTTTGAAGTTCTTTGCTTGGAAATGCTTCTACACTAAGCATTTGGACAAATGTAAAGGTCCACGGCAACCGAAAACTGAATGCAAAATATGCGGTAAACGATTTAGTAGCAGACATTACCTCGGTCTTCATAAGGAAACTCACaaaggatataaaaaaaaatgcggtCAGTGCGGCAAGGAAATTAGCAGTCATTTTCTAAGCAGACACATGAAATTGCATACTAATGGAAAACCTTTTAAGTGTGAAAACTGTGGAAAGTCGTTTGCTTCGAAAAACACGTATATGGATAGCGGGCATAAGGAAATTTGTAAGCCTATAGGTAACACCATCGACGACACTGAAGAGCCCATCTTACACTCGAGAGGAAACAACGCTATATTGGAAGTTACATAA
Protein Sequence
MVYIDLQEEFEDFNQGDTFHCQPSKNSTEKQLCILDIVKEESRTTESTSIVDVKNAGINETEKFHSNLYHPEGNIEGLDDILLGVDRHLTSIDAKHYDSEDDVPISLLKSRLAKDEDGADSQSNSLPEAFCIPSNVQGDSFHCQPDEYSSGSSLYILDIVKEEPRLSESTSIVAVKDAEIDKGESNINHPESSIEEPDNVLSRRDGRRLAINYTKPIDSEDDVPIDLLKSRLYKNGDETDNVLSRRDFRRPAINYTKLIDSEDGVPIDLLKSILYKNGDETESQSKVHLEIHKGIRHKCNQCDKEFTHINALRRHINWHANPKPFKCENCGKLLCSKNEYTRHMEICKRRSKPQQLNKCDHCDKEFRSIYNLHKHMRLHKNAKSFKCGSCGKLFRRKDLCIKHNVICKRRSKPQQSCKPQPIHSELKQQILLPGKKAACEICGKQFRQKAYLDFHMDIHKGIRYKCDQCGKEFKTRVSLRGHMHRHTLTERYKCEECGEFFAWKRSYNKHLDICKGARQPKTKPKCEICGKQFHRKAYLNLHMDIHKGIRHKCDQCGKEFKTRNSLKCHMKLHTLTEKYKCEDCGEFFVWKSSLTKHVDRCKGPPQPKTKPECKICGKQFHRKAYLDLHMEIHKGIRHKCHDCGKEFKTHISLKCHMKRHTSTKSYKCEKCLKFFAWKCFYTKHLDKCKGPRQPKTECKICGKRFSSRHYLGLHKETHKGYKKKCGQCGKEISSHFLSRHMKLHTNGKPFKCENCGKSFASKNTYMDSGHKEICKPIGNTIDDTEEPILHSRGNNAILEVT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-