Tnob018132.1
Basic Information
- Insect
- Thereva nobilitata
- Gene Symbol
- -
- Assembly
- GCA_963855945.1
- Location
- OY979694.1:232453673-232459293[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 6.1e-07 0.00015 23.7 1.1 3 23 419 439 418 439 0.98 2 12 7.4e-05 0.018 17.2 2.4 1 23 444 466 444 466 0.98 3 12 0.016 3.8 9.9 4.7 1 15 472 486 472 493 0.85 4 12 5.1e-06 0.0012 20.8 0.3 3 23 524 544 522 544 0.96 5 12 3.8e-06 0.00092 21.2 1.5 2 23 550 571 550 571 0.98 6 12 0.22 54 6.3 0.7 1 14 577 590 577 594 0.83 7 12 3.1e-05 0.0075 18.4 0.7 2 23 610 631 609 631 0.96 8 12 2.4e-05 0.0059 18.7 4.2 2 23 637 658 637 658 0.98 9 12 0.00067 0.16 14.2 0.6 1 21 664 684 664 685 0.94 10 12 6.6e-06 0.0016 20.5 0.6 3 23 717 737 716 737 0.97 11 12 4.8e-06 0.0012 20.9 3.2 1 23 742 764 742 764 0.98 12 12 0.39 94 5.5 0.7 1 20 770 789 770 791 0.90
Sequence Information
- Coding Sequence
- ATGGACACTCTGTGCCGGATTTGCATTGAACAAGTGACCAGGTGCACCTCATTAAGTTCTAGAATCGAAGATTCCTCAAGCAAGTCGTACTTTGATTTCTTAAATAAGTGTACAACTCTAAATGCACGTGAAAGTGATAGTCTGCCCCAAAGCCTTTGCTCAGTTTGTGCTAATGCTATGAAAACGTTTTATTCATTCATGAAACTGGCTGAGAAATCCGATCTAATTCTGAGGGAAGCCTTGAGAAACTTAATTACAGAAGGAAGATACAATGACCGCAGAGaaattccTTGTGGAGAAATTGCAATAACAAAGAAGATTGAGAGGCACACAGAACTTATATCAGTAAAAACTATGGTTTATATTGATTTACAGGAAGAGTCTGAAGATTTTAACAAGGACTGCTCTTTTCATTGCCAGCCAAGCAAAAACTCAACGGAAAAACAACTTTGTATGCTGGATATTGTGAAGAAAGAATCACACACAACCGAGAGCACATCAATTGTTGACTTGAAACGTGCTGAAATCGTAGAAACCGAAAAACTTGAATCTAATCTAGATCATTCCAAGGGGGACATCGAGGAACTTGATGACATTTTATTCTGTATAGATCATCATCTTACCAGCATTGATACAAAGCATGATTCTGAGGATGACGTACCAATTAGTTTACTGAAAAGTAGATTGGCTAAAGATGAGGATGGAGCTGATTCTCAAAGTAACTCTTTACCTGAAGCATTTTGCATCCCTTCTAACGTGCAATCAAAAATAGGTAGAACTGAAGCTAAAAGTAAAGAAGTAGTAAAGGAAGATCCTCAAAGTGTTCATGGTTCGGGTGGTCTAATTGgaATTTATTGCGAGCAGATCACAATAAGAAACGAGAAAGTTGAGGAAGACTCATTTCATTGTCAGCCAAGAAAAAACTCAACTGAATCATCACCTTATATCCTCGATTTTGTGAAGGAAGAACCAGGCTTGTCCGAAAGCACCTCAATTGTTGCTGTGAAAAATGCTGAAATCGACGAAGGTGAATCTAATCTTAATCATCCGGAAAAGAGCACAGAGGAACCTGACGACTTTTTATCACGTATAGATCGTCTTCTAGCGAGCATTGATATCGAGCATACTGATTCTGAGGATGACGAGTCCATTAGTTCATTGAAAAGGAGTTTGGATAAAAATGGGGATGAAACTGATTCTCAAAGCAGTTCTTGCGAAGAAATAACAGAAGGAAACGAGACGATTCGGCATGGATGCAAGATATGCGGTAAAAAATTTAGTAGAAAATCATACCTCAAAGTCCATCTAGACAGTCACAGGGGGATTAGACACAAATGCGATCAGTGCGGCATGGATTTCCAAAGCATGTATAATCTAAGCAGGCACATGAAGTGGCACGCTAATCCAAAACCGTTCAAGTGTGAAAACTGTGGCAAGTCGTTTTGTCGTAAAGATCGTTGCATTAAGCATAATGAAATTTGCAAACGTCGAAGTAAATCACAGCTATTAAAAATGCCGGAATCCATATCGGTATTGAAAACATCGGAATTGAAATCATCGGAAACTGATTGCGGAATATGTGGTAAACAATTTAGTAGAAAAGATTACCTCGATATTCATATGCAAAATCATATGGGGATTATACCAAAATGCGATATATGCGGCAAGGTATTTGAGCACGGAAGCAGTCTAAGCAAGCACATGAAATTGCACAGTAATCCAAAACGGTACAATTGTGAAGTCTGTGGGAAGTCACTTTCTAGTTACTACTCCAAGCACAGGGAATATTGTAGACGTCCAGGCGAACCTTTGAATATAACAAAAGTTGAATGCGAAATATgcggaaaaaaatattgtaggaAAGAAACCCTTGATATTCATATGGAATTACATAAGGGAGTTACAAGAAAATGCGATCAATGCGGCAAGGAATTTAAACACAGATTAAGTTTTACAAGACACATGAGATGGCACAAAAATCCAAGACCGTTTAAGTGTGAATACTGTGGGAAGTCGCTTGCTAGGAAACCCAGCTACGATAAGCAtaagaaaatttgtaaactgGCAGATAAACAGCAGCAGTTGAAGCCTCAACCCATTCATACTGAaccagaaaaacaaattttattacctGGTATGAAGGTTGCATGCGAAATATGCGGTAAACAATTTCGTAAAAAGTCATACCTCAATCTTCATTTGGAAAGTCACAGCGGAATTCGACATAAATGCGACCAATGCGGCAAGGATTTTAAAACCCGCATTTCTTTAAAAAGTCACATGGAACGGCACACTAATCCACAATCGTTTAAGTGTGAAAACTGTGGGGAACTCTTTGCTTGGAAATGCACTTACACTAGGCATGTGGACATTTGTAAAGGTCCAGGTCAACCGAAAAACACGTACATGGATAGCGGGCATAAGGAAATTTGTAACCCTATCGGTAATGCGATCGACGACACAGTAACAACTGAGGAGCCACACTTGCACTGGAGTGGAAACAATGATATAGTAGAAGTTACGTAA
- Protein Sequence
- MDTLCRICIEQVTRCTSLSSRIEDSSSKSYFDFLNKCTTLNARESDSLPQSLCSVCANAMKTFYSFMKLAEKSDLILREALRNLITEGRYNDRREIPCGEIAITKKIERHTELISVKTMVYIDLQEESEDFNKDCSFHCQPSKNSTEKQLCMLDIVKKESHTTESTSIVDLKRAEIVETEKLESNLDHSKGDIEELDDILFCIDHHLTSIDTKHDSEDDVPISLLKSRLAKDEDGADSQSNSLPEAFCIPSNVQSKIGRTEAKSKEVVKEDPQSVHGSGGLIGIYCEQITIRNEKVEEDSFHCQPRKNSTESSPYILDFVKEEPGLSESTSIVAVKNAEIDEGESNLNHPEKSTEEPDDFLSRIDRLLASIDIEHTDSEDDESISSLKRSLDKNGDETDSQSSSCEEITEGNETIRHGCKICGKKFSRKSYLKVHLDSHRGIRHKCDQCGMDFQSMYNLSRHMKWHANPKPFKCENCGKSFCRKDRCIKHNEICKRRSKSQLLKMPESISVLKTSELKSSETDCGICGKQFSRKDYLDIHMQNHMGIIPKCDICGKVFEHGSSLSKHMKLHSNPKRYNCEVCGKSLSSYYSKHREYCRRPGEPLNITKVECEICGKKYCRKETLDIHMELHKGVTRKCDQCGKEFKHRLSFTRHMRWHKNPRPFKCEYCGKSLARKPSYDKHKKICKLADKQQQLKPQPIHTEPEKQILLPGMKVACEICGKQFRKKSYLNLHLESHSGIRHKCDQCGKDFKTRISLKSHMERHTNPQSFKCENCGELFAWKCTYTRHVDICKGPGQPKNTYMDSGHKEICNPIGNAIDDTVTTEEPHLHWSGNNDIVEVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -