Tnob047273.1
Basic Information
- Insect
- Thereva nobilitata
- Gene Symbol
- Znf672
- Assembly
- GCA_963855945.1
- Location
- OY979697.1:89767455-89769220[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.042 10 8.5 0.3 2 23 126 148 125 148 0.93 2 11 2.2e-06 0.00052 22.0 0.7 3 23 156 176 155 176 0.98 3 11 0.00012 0.029 16.6 3.1 1 23 182 204 182 204 0.97 4 11 0.00038 0.092 15.0 0.2 1 19 213 231 213 235 0.92 5 11 4e-06 0.00097 21.2 1.0 1 23 241 263 241 263 0.99 6 11 2e-05 0.0048 19.0 2.3 1 23 269 291 269 291 0.98 7 11 1.1e-05 0.0028 19.7 1.2 1 23 297 319 297 319 0.97 8 11 3.5e-08 8.5e-06 27.7 0.2 2 23 325 346 324 346 0.97 9 11 8.8e-05 0.021 17.0 5.3 1 23 352 374 352 374 0.98 10 11 1.1e-05 0.0026 19.8 1.1 1 23 379 401 379 401 0.94 11 11 0.00094 0.23 13.7 1.6 1 23 407 430 407 430 0.98
Sequence Information
- Coding Sequence
- ATGGAGTGTGTTGACTTGAGTTGCCCCATAGATGATGATTCAACATTAACATACTTAGATACCTTCAATAGCTGCACAAATTTACGAGCTTCTATAGATGATAATTTACCAAAAAATCTCTGTTATATTTGCGCTGAAGAACTAAAGAATGTAGTTCAATTCCTAGAAAGAGCTAAAGAATCTGATGTAATTCTAAGAGAAAGACTAAAATCCCAACCACTTCGGAAAACTCGAGTTGAAACCGCAACACAAGAATATTATGACATAAAAGACGAAGGAAATGTTAATGTtaaaGATGAAGTTATTCTTTTTGAAATATCACCGAATAAAGAAGACAGCTCTGATTCAGATAACCCGGAACCATCAGAGACACTTTCATGTAGTCCATGTAAACAAATTTATGAAACAAAGGATGAGCTAGATCAGCATGTAAAAACAAATCATTGGAATGGAAAATCGTGGTTGTGTAATGTTTGCGGGAAAACGTATGCTCAAAAATCTACACTTACTTCGCATCTATTAAAACATAAGGGTGAGCGTCCTTATAAATGTAATTATTGCCCTAAATCGTACTTTACCAAAAATGGTCTGCAAATTCATTCCCATGTTCATGATGAGGAAAAACAAGATCCAAAATTTGTTTGTACTGTATGTGATAAAGCATTTGCTACAAGGCAAAGGTTGCGAGTGCACGATTTAGTCCATACAGGGGAGAAAAACTATGAGTGCACACTTTGCTCTAAAAAGTTTGCAACACCCTTTCGGCTGCGGAATCACATTCGTATTCACACAGGTGAACGACCATTTGAATGCAAGGAGTGCGGCCTAAAATTTACACAAAGTAATGCGTTAAGATGTCATATGAGAATTCATACAGGTGAAAAGCCTTATGAATGTAAAATCTGTGGCAAAAGATTTAATCAAAATACTATACTAAAAACTCATATGACCCTACATACGGGAAAAACAGTCAAATGTCCCGATTGCGACAAAATGTTTAGCAGACCATCGTATTTAATTTTGCATCAAAGGGAACATACAGGTGAAAAGCCGTATGTATGCCATAAATGCCCAAATCGGTACAAGCAAAAGAGTCACCTTGATCGACATTTAGATACTCATTTTGGAGTTAAACATGCCTGCGCTGAATGTGGAAAAGAATACTCAAAGAAGTCTTCTCTTAAAATACACATGTTTGAACATTCCGAAGTTAAGCCATTTCAATGTGGAGTTTGTGCTTTGTCTTTTAACAGGAAAGATCGATTTCGGTATCATTTGAAGAAAGTTCAtgatatattattaataaataatcaaGCAGCAGATATGGTTTCGGATAGCGGCAAAATTCAAGAGATTGAGAGTGGAGCGGATGAAGAAATGAATCCTGATCAAACAGAATCGCATGATCTGGAGATTGAAGAAAGTAATTTAGAAAGTTAA
- Protein Sequence
- MECVDLSCPIDDDSTLTYLDTFNSCTNLRASIDDNLPKNLCYICAEELKNVVQFLERAKESDVILRERLKSQPLRKTRVETATQEYYDIKDEGNVNVKDEVILFEISPNKEDSSDSDNPEPSETLSCSPCKQIYETKDELDQHVKTNHWNGKSWLCNVCGKTYAQKSTLTSHLLKHKGERPYKCNYCPKSYFTKNGLQIHSHVHDEEKQDPKFVCTVCDKAFATRQRLRVHDLVHTGEKNYECTLCSKKFATPFRLRNHIRIHTGERPFECKECGLKFTQSNALRCHMRIHTGEKPYECKICGKRFNQNTILKTHMTLHTGKTVKCPDCDKMFSRPSYLILHQREHTGEKPYVCHKCPNRYKQKSHLDRHLDTHFGVKHACAECGKEYSKKSSLKIHMFEHSEVKPFQCGVCALSFNRKDRFRYHLKKVHDILLINNQAADMVSDSGKIQEIESGADEEMNPDQTESHDLEIEESNLES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01432449;
- 90% Identity
- -
- 80% Identity
- -