Tnob018118.1
Basic Information
- Insect
- Thereva nobilitata
- Gene Symbol
- -
- Assembly
- GCA_963855945.1
- Location
- OY979694.1:232307181-232312310[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.9e-06 0.00095 21.2 0.9 1 23 296 319 296 319 0.98 2 13 0.0015 0.37 13.1 0.6 1 23 325 347 325 347 0.97 3 13 4.1e-06 0.00099 21.2 0.2 1 23 375 397 375 397 0.97 4 13 2e-05 0.0049 19.0 6.7 2 23 403 424 402 424 0.98 5 13 0.00031 0.075 15.2 0.5 1 21 430 450 430 451 0.95 6 13 7.7e-05 0.019 17.1 0.1 1 23 464 486 464 486 0.97 7 13 0.052 13 8.2 0.8 2 14 492 504 491 505 0.90 8 13 1.1e-06 0.00027 23.0 0.4 2 23 515 536 514 536 0.96 9 13 3.2e-05 0.0077 18.4 0.7 2 23 542 563 541 563 0.97 10 13 0.66 1.6e+02 4.8 3.0 1 13 569 581 569 584 0.92 11 13 0.00047 0.11 14.7 0.8 2 23 604 625 604 625 0.96 12 13 4.5e-07 0.00011 24.2 1.2 2 23 631 652 630 652 0.97 13 13 0.0048 1.2 11.5 5.9 1 21 658 678 658 679 0.94
Sequence Information
- Coding Sequence
- ATGGATGCTTTGTGCCGAATTTGCCTTGAAAAGACAACAAAATTCACCCCGCTAAATGCTAAAATTGAAAATCCACCAGCTCTTACATTCATTGATTTTCTAAATAACTGCATAAGCCTAAGTGCATGTGAAAATGATAAGCTGCCGCAACGCCTTTGCCCAATGTGTGCTAATAGTATGAGGACATTTTATGCATTGATGAAATTGGCCGAACAATCCGATATAATTTTGAGGGAAGCGCTCACAACCTTAATTGCGAAAGAAGGATGCAATAGCAACGGAGaaatttCTTGCGAGGAAATCCCAATAAGAAACGAGAAGATTAAGAAGGAGCCTGAAGATATAAACAAAGAAGACTCATTTCATTCTCAGCCAAATGAAAACTCAACCGGATCATCGCTTTATATTCTGGATATTGTTAAGGAAGAGCCGTGCATATCCGAAGAAGGCACATCAATTGTTGACCTCAAAGATgctaataaaataaatgaaagcgACAGATTTCACTCTACTCTTGATCATCAGGAATGGCGCCTCGATGAATTGGGTTATATTTTATCATATGCAGATCGTGGCCTAGTGAGCACCGATGCAGAGCACAGTGATTCTGAGGATGATGTACCAATTAgtttattaaaaagaagatgCCCTAAAAATGAGGATAAAATCTCCAACTCTCAGAGTAATCTTCGTTCTGAAGAACATTGCGGTTCTTCTAACATGCAAaaaacaacAGATAAAATTAAAGCTGAAGGTGAAGAAGTAATTAAGGAAGGAGCTACAGATCCTCAAGTTCCTTTAGTTCCTACTGAAACTGAATGCACGGAAAACATTGATAAATCTATAGAACGCAACATAGTATTAACAACAacattaaattataaatataaatgtttAGTTTGCGAAAAAGTTTTTAAGTACCCCTCAAATCGGTGGATACATATGAGAAGAACACATTGCGGCGGAAAATTCTTTAATTGTGAAAAAtgtggaaaaaaatttctttttgaagcAGAATACGAGTCGCATCTACGCGTTCATGTAAACATTGGTGAAACACTTTCGCAAAGTGGTATAACGAAAAAATATCGTTTACCATTTGAACTTGCTGAACAGAAGCAGTATGAATGCGAGATATGCGGTAAAAAATTTAGTGCAAAAGAAGACCTCAATTTACATTTGGAAAATCACAAGGGGATTACACAAAAATGCGATCAGTGCGACAAGGAATTTAAACACAGATGTAGTCTAAACAGGCACATCAGAATGCACACTAATCCAAAACCATTTAAGTGTGAAAATTGTGAAAAGTCCTTTAGTTGGAAAAACAACTACATTAAGCATATGGAGATTTGTAAACGTCCAGGTGAGCAATTGAATAGAACGAAGTTTGAGTGTGAAAtatgcggaaaaaaattaagtagCGTAGAATACCTCATGGTTCATATGGACAATCATATGGGGATTACACAAAAATGCGAATTATGTGGAAAGGAATTTAAACACAAAGGCAAACCACAGCAATTGAATAAAACGAAAACTGAGTGTGAAATATGTGGTAAACAATTTAGTACTAAAGAATACCTGAATCTACATATGGAAAATCACAAGCGGATTAGACAAACATGCGATCAATGCGACAGGGAATTTCCAACTATCAATTCTCTACGCAAGCATATGAAATGGCACGCGGATCCAAAGCCTTTTAAATGTGAAAACTGTGGAAATTCGTTTGCTACGAAATGCACCAGGCATGTAGACAGATGTACACGTCCACGTAAACCACAGCTATTGGATAAAACGAGAGCCTCTTGCGAGATATGCGGTAAAAATTTTGCTTGCAAAGGTAGCCTTAATGTTCACATGGAATATCACACGGGGATTGCAAAAAAATGCGACCAATGCGACAAGGAGTTTACAACCCGCTCTGCTCTACGCAGGCACATTAACTGGCATGCTAATCCAACACCGTTTAAGTGTAAAAACTGTGGAAAGCATTTTACTCGGAAGTACAGGTGCATTAATcatatgaaaatttgtaagcCTCTAGCTAATTCGATCGAGGAAACGGTAACAGTTGAGGATTGA
- Protein Sequence
- MDALCRICLEKTTKFTPLNAKIENPPALTFIDFLNNCISLSACENDKLPQRLCPMCANSMRTFYALMKLAEQSDIILREALTTLIAKEGCNSNGEISCEEIPIRNEKIKKEPEDINKEDSFHSQPNENSTGSSLYILDIVKEEPCISEEGTSIVDLKDANKINESDRFHSTLDHQEWRLDELGYILSYADRGLVSTDAEHSDSEDDVPISLLKRRCPKNEDKISNSQSNLRSEEHCGSSNMQKTTDKIKAEGEEVIKEGATDPQVPLVPTETECTENIDKSIERNIVLTTTLNYKYKCLVCEKVFKYPSNRWIHMRRTHCGGKFFNCEKCGKKFLFEAEYESHLRVHVNIGETLSQSGITKKYRLPFELAEQKQYECEICGKKFSAKEDLNLHLENHKGITQKCDQCDKEFKHRCSLNRHIRMHTNPKPFKCENCEKSFSWKNNYIKHMEICKRPGEQLNRTKFECEICGKKLSSVEYLMVHMDNHMGITQKCELCGKEFKHKGKPQQLNKTKTECEICGKQFSTKEYLNLHMENHKRIRQTCDQCDREFPTINSLRKHMKWHADPKPFKCENCGNSFATKCTRHVDRCTRPRKPQLLDKTRASCEICGKNFACKGSLNVHMEYHTGIAKKCDQCDKEFTTRSALRRHINWHANPTPFKCKNCGKHFTRKYRCINHMKICKPLANSIEETVTVED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -