Tnob018340.1
Basic Information
- Insect
- Thereva nobilitata
- Gene Symbol
- -
- Assembly
- GCA_963855945.1
- Location
- OY979694.1:235816466-235819811[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00019 0.047 15.9 0.2 1 23 317 340 317 340 0.92 2 12 0.00017 0.04 16.1 2.3 1 23 348 370 348 370 0.98 3 12 0.00033 0.081 15.1 1.1 1 23 377 399 377 399 0.95 4 12 1.3e-06 0.00032 22.7 1.8 1 23 405 427 405 427 0.99 5 12 7.6e-07 0.00019 23.4 1.0 1 23 434 456 434 456 0.98 6 12 4.1e-05 0.01 18.0 1.1 1 23 462 484 462 484 0.95 7 12 3.7e-05 0.009 18.1 0.3 1 23 490 512 490 512 0.98 8 12 7.6e-07 0.00018 23.5 0.8 1 23 518 541 518 541 0.96 9 12 3.3e-05 0.0081 18.3 1.7 1 23 547 570 547 570 0.96 10 12 0.0029 0.71 12.2 4.2 1 23 576 598 576 598 0.99 11 12 1.9e-05 0.0046 19.1 0.5 1 23 604 626 604 626 0.96 12 12 0.00029 0.071 15.3 0.2 1 22 632 653 632 656 0.92
Sequence Information
- Coding Sequence
- atGACGGAGCTCTTAAAAGAGATTCAATCAGAGACTGAGACGCTGAAATGTTTTCTTTGCAGCACTGAATTTAGTGAGCGTGAGGAAACATATTTGCTTTTCGAAAAAAGGCTCAAGACAAATGGGGTTGTAGAATGCTCGTTGGCGGATGTGTTGTCTACAGTTTTAGGAAGGCAGTTGAGCGAGCAAAGTGTCCATTCCAAGTTACTGTGTTCCCGGTGCAATGATAGTCTACACGATTTCGAAATGACAGAGCAACATTATCTAGATATGAAGTATAAAATTATACGGGATTTCAATAGGACTGCGAATTTACACGGCTTCGAAGGTGTCATGTTAGAAGTTGAAGAAAACGGGGAGAGGTTCACAATATTTTTGGATGATACCAATGCCCAAGAGAATATAGTGGTGGCTGATGGCGGCCTTACTCCAGTACAGATCATGACAGCGATGGCCTCGCCACAGGCTGAAAATGTGGATGGAGGCAGTCCAGAAAAGATAAAAATGGAGGAGTTCGATTCCTCTATTGAAGCAGAAGAATATTATGAAGCAAGTAATGATAATATGGTTGAGATTATAACGGACGatgtTCCGTACGAGCAAATTATTGAGCACACTTCTCAGGTCAGCAGCGACAGTACTGTTATGGATCACCAAGAGGCAAGTCTACATTCAGAAGCGGAGTGTGAAGAATCAAGTTTATGTACTACGTTTTTAAAATCGGAAGACAACACTCAGCCAGATCCAACTCGATTATCGCCATTAAATGAAGGAGCAGTGAAACATCGAAAGAAAGTCCCAAAAACTGATGATAACACGCAAATAGTTAAACTCGTTGGGGAAAAGTACGTATGTCTGCTATGTAACTTAACAGAAGGAGAAGTTCCTTATGAATTTGATGCTAGAACTGTAGCAATACATGTAAAATCGGTGCATAATCAACGCGTTTACATCTGCGATCTTTGTGGTGAAGATTTCCGTAAGCGAAACTATCTAACTGATCACATGGACGACGAGCATGGCGGCACAGAAGATGGCGAATTTCAATGTGAAACTTGCAAtcgaatttttacaaatttgcgATTGTTTCGCATTCATAAGAGACTCCACTATAGCTCTTCGAAATCATTCCTTTGCGTTCAGTGTAATAAGAAGTATAGCTCTAAGAATTTGTTAGATGAACATATGAACATGCACACAGGTCGACGTCCTTACAAGTGTACATATTGCACAAAGGATTTTGCCTCTAAATATACCTTGACTGcacatttaaaaattcatacCGACAGACCGCGCTCGTTTGCTTGCAAAGATTGCAACAAAGCATTTTTCAGTGCACAAAATCTACTGCAGCATATGAAGACGCATTCTGGCGTAAAAGAGTTCATTtgtgaattttgtaaaaaggcgTTCGTCACTCAACACAATTTAGAAGTTCATAAAGTCGTTCACACTGGCTATAAGCCATTTATATGCAGAACTTGTGGCAAAGCGTTTGCAAGGCGTGCTGAGATCAAAGATCATGAACGGACGCATACAGGAGAAAAGCCGTTTACTTGCGATATTTGTGACATGTCATTTGCGCAAAGATCTAATTTGACTACTCATAAAAGAGCAACTCATTTGAATGATAAGAGATATAAATGTGAACAGTGCGATCGTTCCTTTAAAAGACGACGACTGCTGGACTATCATGTGCGCGCAACGCATACGGGGGAAAGACCTTACAAGTGTGACACCTGCAATGCAACATTTGTTTATCCCGAACATCATAAGAAGCACCTTCGAATTCACACTGGTGTGAAGCCGTATGCTTGCGAAGTTTGCGGTAAAACATTTAACAGTCGGGACAACCGCAACGCCCATCGGTTCATTCACAGCGACAAGAAACCTTATGAGTGTTTAGTCTGTGGCCAAGGATTTATGCGAAAGCCGTTGTTAATCACGCATATGAAACAATTTgGCCATGTTAACGATACCATAGTTGTAAACCAACCGCGTTTGTCTAATGATCTAAAACTAGAAACCGATAGTGGATTAACCGAAGACAGCATGACGCAAGATAACGAAATGGTGGAGGAACACTTAATTATTGATGGATCAGTAACAGTAGGTGAGAGTATGAAACTTGAAAACTCCAAGGAACAAGTTGGTGATAAGTCAGAGGAAATTTTAGCTGAAGATTTTGCTTCAGTTATTTCAACAGATCAAATAATAGTTACCGATAATTGTCACTACATAAAGAACGAAGATGGTACAATGCAGATCATTCAAATTAGAACGAAAGATAAAGATGGAGAAGATCGATTCACGTGGGTAAATTTAGTAGCGGAAGATGAAAGCTAG
- Protein Sequence
- MTELLKEIQSETETLKCFLCSTEFSEREETYLLFEKRLKTNGVVECSLADVLSTVLGRQLSEQSVHSKLLCSRCNDSLHDFEMTEQHYLDMKYKIIRDFNRTANLHGFEGVMLEVEENGERFTIFLDDTNAQENIVVADGGLTPVQIMTAMASPQAENVDGGSPEKIKMEEFDSSIEAEEYYEASNDNMVEIITDDVPYEQIIEHTSQVSSDSTVMDHQEASLHSEAECEESSLCTTFLKSEDNTQPDPTRLSPLNEGAVKHRKKVPKTDDNTQIVKLVGEKYVCLLCNLTEGEVPYEFDARTVAIHVKSVHNQRVYICDLCGEDFRKRNYLTDHMDDEHGGTEDGEFQCETCNRIFTNLRLFRIHKRLHYSSSKSFLCVQCNKKYSSKNLLDEHMNMHTGRRPYKCTYCTKDFASKYTLTAHLKIHTDRPRSFACKDCNKAFFSAQNLLQHMKTHSGVKEFICEFCKKAFVTQHNLEVHKVVHTGYKPFICRTCGKAFARRAEIKDHERTHTGEKPFTCDICDMSFAQRSNLTTHKRATHLNDKRYKCEQCDRSFKRRRLLDYHVRATHTGERPYKCDTCNATFVYPEHHKKHLRIHTGVKPYACEVCGKTFNSRDNRNAHRFIHSDKKPYECLVCGQGFMRKPLLITHMKQFGHVNDTIVVNQPRLSNDLKLETDSGLTEDSMTQDNEMVEEHLIIDGSVTVGESMKLENSKEQVGDKSEEILAEDFASVISTDQIIVTDNCHYIKNEDGTMQIIQIRTKDKDGEDRFTWVNLVAEDES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01432443;
- 90% Identity
- iTF_01432443;
- 80% Identity
- -