Tnob018116.1
Basic Information
- Insect
- Thereva nobilitata
- Gene Symbol
- -
- Assembly
- GCA_963855945.1
- Location
- OY979694.1:232296800-232300100[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 8.9e-05 0.022 16.9 4.3 1 23 322 344 322 344 0.98 2 15 0.0011 0.26 13.5 0.8 1 23 349 371 349 371 0.98 3 15 3.5 8.5e+02 2.5 2.8 1 23 376 406 376 406 0.77 4 15 0.00015 0.037 16.2 0.4 2 23 410 431 410 431 0.98 5 15 3.1e-05 0.0075 18.4 3.0 1 23 435 457 435 457 0.98 6 15 9.5e-06 0.0023 20.0 5.9 2 23 462 483 461 483 0.97 7 15 1.6e-06 0.00038 22.5 2.2 1 23 489 512 489 512 0.95 8 15 0.00068 0.16 14.2 5.6 2 23 515 537 514 537 0.97 9 15 0.00025 0.062 15.5 3.0 3 23 548 568 547 568 0.96 10 15 1.7e-07 4.1e-05 25.5 1.5 2 23 574 595 573 595 0.97 11 15 4e-06 0.00097 21.2 1.9 1 23 599 621 599 621 0.98 12 15 1.2e-05 0.0028 19.7 2.3 2 23 627 648 626 648 0.97 13 15 3.2e-06 0.00078 21.5 0.9 2 23 653 674 652 674 0.96 14 15 1.6e-06 0.00039 22.4 3.6 2 23 680 701 679 701 0.96 15 15 0.00011 0.027 16.6 1.4 1 21 707 727 707 728 0.95
Sequence Information
- Coding Sequence
- atggatATGGATAGTGTGTGCCGAGTTTGTATTGAAAAGGCAGTAAAATTCACTCCATTAGGTACTAAAATTGAAGTATCGTCAACCCTATCATTCCTTGACTTTCTAAATAAGTGCACAAACCTAAATGCATCCGAAAGTGATAAGCTGCCGCAAAGTCTCTGCTCCCTTTGTGCAAGTAGCCTCAAAACATTTTACTCATTTGTGAAATTGGCCGAAAAATCtaatataattttgaaggaATCATGGAAGGACCTTCAGCAACAATGTAAAGAAGCTCCAGTACCTCAAAATATTCCTTGTGGTTTTATTGATAACAATGaatttccTTGTGAggaaattgcaataaaaaacgAGAAGATTGAGGAAGAGTTCGAAGATTTTAGGAAGGAAAACTCATTTCATTTTCATACCAATGAAAACTTATCTGGATCATCACTTTATATTCTGGATATTGTGAAGGAAGAGGTATGCGTATCCGACGGCACATCAATTGTTGATTCCAAAGATTCTGAAATCAAAGAGAGGCAAACATCTAAGTCTAATCTCGATCAACCAGAAGGACACATCCAGGAATCTGAAGACATTTTATCTTATAAAGAGGGCTCTCATACGAGCGTTGATGCAAATCATAGTGATTGTAAGAATAACGTACCCTCTAATTTATTGAAGAGGGAATTGATTAAAATTGAGGACGAAATCGATGTTCAAAGTGACGATGACCAATCCCATTGCATTCCTTCCAATGTCAAAagaCTAAAACTGAGTATAAGAATGACATTACCATTGGGCATGCAGGCACAAATCAGATTTCAAGTGAAGGACGATTCATTAACACCAAATGTTCCTGGAAGCACCGAAAGCACTTCTAAATGTATAGAATGCGATTTTGACATCAATGATAGCGAAGATTTTACGACAAACTCCCGAGAACATTTAGTAATTCGCaaagaaacaaagaaatatAAATGTTCAATTTGTGGAAAAGGTTTTATTCATCTCTCATGCCGCTGGAAACATATGAAATTGCATGGCAAAAACCCCTATGAATGTGAAATTTGTGGGGAAAAACTTCGTAATAAAGCAGATCACAAGTCGCATTTACGCGTTCATTCAAACATCAGATTTACATGCCCACAATGTGGTAGGCTTGAATGCCAGCTAAGCAATACAGAAATTACATCACAACAATCCCTCAATATCCATATTGAAAGTCACATTACAGAAAAATGCGATAAGTGCGACCAAGAATTTGAAAACTTGGATGCTCTAAGCATGCACATGAAGTTGcacaaaaaaaagtatgaatgtgaaaaatgcagtaaaatattttataaaaaacatttgCTCAATGCTCATATGGACAAGCACAATGGGAAACTAAAATGCCAACAGTGTGGCAAGGAATTTAAATTCAGATACAGTCTATGCAGGCATATGAAAAGGCACACTGAACCGAAGCCGTTTCAATGTCAAAAATGCGGTGCAACATTTCGTAGAAAACATGAGCTCAAAGTTCATATGGaagaaaatcactcaaaaaaatgCGATCAGTGTGGCAAAGAATTTCAACATATATGTAGTCTAAACAGGCACATCAGGAGACAGCACACTAATCCAAAACAGGTCGAGTATGAAATATGTTCGTTATGCAGCAAACAGTTTAGATCAAAACATACCCTCAATATTCATATGGAGAATCACAAGGGGATTACAAAAAAATGCGATCAATGCGGCAAAGAATTTAGAAACAGTGATGCTTTAAAGCGGCACATGAAATTGCACACAAAACCGTTCAAGTGTGAAAAATGCggtaaattatttattagaaaataccAGTTCAATGTTCATATGGAAAACCACAAGGGGGTCAAAAAGAAATGCCAACAGTGTGACAAGGaatttaaaaacagtaacaCTCTGAAGCAGCACATGATATTGCATACAAATCCGTTGAAATGTGAAATATGCGGTAAATTTTTTACTGAAAAATACCAGTTCAATGTTCATATGGAAAACCACAAGAGGGTCAAAAAGAAATGCCAACAGTGTGATAAGGAATTTAAAAACAGTGATCATCTACGCAGACACATGGAATGGCATGTTGATCCGAAACCGTTTAAGTGTAAGAACTGTGGGAAGTTGCTTTCTAGGAAACACAACTACGTTAGGCATATGGAAATTTGTCAACCTGTAGATAATTCGTTCGAGAAAGCAGTAACAATGGAGGCATCCAGCTTTCACTCGAAAGGAAACGAAGATATATCACAGTAA
- Protein Sequence
- MDMDSVCRVCIEKAVKFTPLGTKIEVSSTLSFLDFLNKCTNLNASESDKLPQSLCSLCASSLKTFYSFVKLAEKSNIILKESWKDLQQQCKEAPVPQNIPCGFIDNNEFPCEEIAIKNEKIEEEFEDFRKENSFHFHTNENLSGSSLYILDIVKEEVCVSDGTSIVDSKDSEIKERQTSKSNLDQPEGHIQESEDILSYKEGSHTSVDANHSDCKNNVPSNLLKRELIKIEDEIDVQSDDDQSHCIPSNVKRLKLSIRMTLPLGMQAQIRFQVKDDSLTPNVPGSTESTSKCIECDFDINDSEDFTTNSREHLVIRKETKKYKCSICGKGFIHLSCRWKHMKLHGKNPYECEICGEKLRNKADHKSHLRVHSNIRFTCPQCGRLECQLSNTEITSQQSLNIHIESHITEKCDKCDQEFENLDALSMHMKLHKKKYECEKCSKIFYKKHLLNAHMDKHNGKLKCQQCGKEFKFRYSLCRHMKRHTEPKPFQCQKCGATFRRKHELKVHMEENHSKKCDQCGKEFQHICSLNRHIRRQHTNPKQVEYEICSLCSKQFRSKHTLNIHMENHKGITKKCDQCGKEFRNSDALKRHMKLHTKPFKCEKCGKLFIRKYQFNVHMENHKGVKKKCQQCDKEFKNSNTLKQHMILHTNPLKCEICGKFFTEKYQFNVHMENHKRVKKKCQQCDKEFKNSDHLRRHMEWHVDPKPFKCKNCGKLLSRKHNYVRHMEICQPVDNSFEKAVTMEASSFHSKGNEDISQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -