Tnob018136.1
Basic Information
- Insect
- Thereva nobilitata
- Gene Symbol
- -
- Assembly
- GCA_963855945.1
- Location
- OY979694.1:232491628-232500183[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 3.2e-05 0.0079 18.3 3.6 1 23 443 465 443 465 0.97 2 19 0.0016 0.4 13.0 1.4 1 21 471 491 471 492 0.95 3 19 0.00074 0.18 14.0 7.4 2 21 504 523 503 525 0.95 4 19 0.21 50 6.4 2.4 1 19 531 549 531 550 0.88 5 19 7.8e-07 0.00019 23.4 0.7 3 23 574 594 572 594 0.97 6 19 0.25 61 6.1 2.3 1 20 601 620 601 622 0.92 7 19 0.00031 0.077 15.2 0.8 2 23 634 655 634 655 0.93 8 19 0.054 13 8.2 0.4 2 23 661 681 660 681 0.96 9 19 3.4e-07 8.4e-05 24.5 0.1 2 23 690 711 689 711 0.96 10 19 4e-05 0.0098 18.0 2.7 2 23 717 738 717 738 0.97 11 19 0.056 14 8.1 1.7 1 12 744 755 744 763 0.86 12 19 1.8e-05 0.0044 19.1 0.5 3 23 787 807 786 807 0.97 13 19 1.2e-06 0.0003 22.8 4.5 2 23 813 834 812 834 0.98 14 19 0.011 2.6 10.4 0.3 1 20 840 859 840 861 0.94 15 19 3.9e-05 0.0095 18.1 1.8 2 23 873 894 873 894 0.98 16 19 2.4e-05 0.0058 18.7 4.4 1 23 899 921 899 921 0.97 17 19 0.017 4.1 9.8 1.9 1 20 927 946 927 948 0.95 18 19 1.2e-05 0.003 19.6 0.8 2 23 957 978 957 978 0.97 19 19 0.0034 0.82 12.0 0.7 1 16 999 1014 999 1016 0.89
Sequence Information
- Coding Sequence
- ATGGATACTCTATGCCGAGTTTGCATTGAAAAGGTGGCAAAATGCACCTCGTTAAGCTCTAGAATGGAAGATTCCTCAAACTTGTCGTTCTTTGATTTCTTAAATAAGTGCACAACTCTAAATGCACGCGAAAGTGATAGTCTGCCGCAAAGCCTTTGCTCAGTTTGTGCTAATGCTATGAAAACGTTTTATTCATTCATGAAACTGGCTGAGAAATCCGATCTAATTTTGAGGGAAGCCTTGAGAAACTTAATTGCAGAAGGAAGATACAATGACCGAAGAGaaattccTTGTGGAGAAATTGCAATAACAAAGAAGATTGAGGAAGGGCCTATAGATTTTAACCAGGGCGACTCATTTCATTGTCAGCCAAGCAAGAACTCAACGGAAAAACAACTTTGTATGTTGGATATTGTGAAGGAAGAATCACGCGCATCCGAGAGCACATCAATTGTTGATGTGAAAAATGCTGGAATCaacgaaactgaaaaatttcaCTCTAATCTTGACCATCCGGAAGGGAACATCGAGGGACTTGATGACATTTTATTGTGCGTAGAACGTCATCTTACAAGCATTGATGCAAAGCATTACGATTCCGAGGATGACGTACCAATTAGTTTACTGAAAAGTAGATGGGCTAAAAATGAGGATAGAGCTGATTCTCAAAGTAACTCTTTATCTGAAGCATTCTGTATCCCTTCTAACGTGCCATCGAAAATAGGTAGAACTGAAGCTGAAAGTAAAGAAGTAGTAAAGGAATATCCTCCAAGTGTTCATGGTGCGGGTGGCCTAATTGATAACGggATTTCTTCCGAGCAGGCTACAATAAGAAACGAGAAAGTTGAGGGAGACTCATTTCATTGTCAGCCAGGTCAATATTCAAGTGGATCATCGCTTTATATTCTGGATATTGTGAAGGAAGAACCACGCTTGTCCGAAAGCACCTCAATTGTTGCTGTTAAAGATGCCGAAATCGACAAAGGTGAATCTAATATTAATCACCCGGAAAGCAGCATCGAGGAACCTGATAACGTTTTATCGCGTAGAGATGGTCGTCGCCTAGCGATCAATTATACCAAGCCTATTGATTCTGAGGATGACGTGCCCATTGATTTACTGAAAAGTAGACTGTATAAAAATGGGGATGAAACTGATAACGTTTTATCACGTAGAGATTTTCGTCGTCCAGCGATCAACTATACCAAGCTTATTGATTCTGAGGATGGCGTGCCCATTGATTTACTGAAAAGTATACTGTATAAACATGGGGATGAAACTGAATCTCAAAGTAAAGTTCACCTGGAAATTCACAAGGGAATTCGACACAAATGCAATCAGTGCGACAAGGAATTTACACATATAAATGCTCTACGCAGGCACATAAATTGGCACGCTAATCCAAAACCGTTCAAGTGTGAAAACTGTGGAAAGCTGCTTTGTAGTAAAAATGAATACACTAGACATATGGAGATTTGTAAACGTCGAAGAAAACCACAGCAATTGAATAAATGCGATCATTGCGACAAGGAATTTCGAAGCATTTATAATCTACACAAGCACATGAGATGCCACAAGAATGCAAAATCGTTTAAATGTGGAAGCTGTGGCAAGTTGTTTCGTCGTAAAGACCTTTGCATTAAGCATAATGTCATTTGTAAACGTCGAAGTAAACCACAGCAATTGAAAACCCCTGAATTGAGAATATCGGAAACTGATTGCGGAATATGCGGTAAGACATTTAGTACAGAGGATCACCTGGTTGTTCATATGAAAAATCATCTGGGAATTACAACATCGTTTAAGTGTGAAAACTGTGGGGAGTTCTTTGTTTGGAAATGCACCTACACTAAGCATTTGGGCAAATGTAAAGGTCCACGGCAACCGAAACCTAAACCTGAATGCGAAATATGTGGTAAACAATTTAGTAAAAGATATCACCTCGGTATTCATAAGGAAGCTcacaaaagaattaaaaaaaaatgcgttgAGTGCGGCAAGCAAATTAGCAGTCTTGGCCTAAAAAGGCACATGATCATGCACACTAATCGAAAAACTGAACCAATTGAATGCGAAATATGCGGAAAGACATATAGTAACAAAGGAAACCTTAATATCCATATGGAATTACATATGGGAGTTACAAGAAAATGCGATCAATGCGGCAAGGTATTTACACACAGAATAAGTTTTTTAAGACACTTGAAATGGCACAAAAATCCACGACCGTTTAAGTGTGAATATTGTGGGAAGGCGTTTTTTAAGAAACTCAGCGAAAAGCATAAGCAAATTTGTAAGCCTCAACCCATTCATAGTGAACCGAAAAAACAAATTCTATTACCTGGTAAGAAGGCTGCATGCGAAATATGCGGTAAACAATTTCGTCAAAAAAGATACCTGAGTCTTCATATGGAACTTCACAATGGAATTATTAAGAAATGCGAGCAGTGCGGCAAGGAATTTAAAAGCAGCCATGCTTTAAAAAGACACATGAAACGGCACACTAATACAGAATCGTATAAGTGTGAAAAATGTGGGGAGTTCTTTGCTTGGAAACGCTCCTACACTAGGCATGTGGACATTTGTAAAGGTCCACGTCAACCGAAAACTAAACCTAAATGTGAAATATGCGGTAAACAATTTCATAGAAATTTCTACCTCAATCTTCATATGGAAGTTCACAAAGGAATTCGACACAAATGCGATCAGTGCGGCAAGGAATTTAAAAGCCGCATTTATTTAAAACGCCACACGAAACTGCACACTTATACAGAATCATATAAGTGTGAAAAATGTTTCAAGTTCTTTGCTTGGAAACGCTCCTTGACTAAGCATTTGGACAAATGTAAAGGTCCACGGCAACCGAATGAATGCAAAATATGCGGTAAAGGATTTAGTACCAGATATTACCTCAGCCTTCATAAGGAAACTCACACAGGAAATAGCATTCATTTCCTAAACAGAGACATGGAATTGCACACTAATGCAAAACCTTTTAAGTGTGAAAACTGTGGAAAGTCGTTTGCTTCGAAAAACACGTATATGGATAGCGGGCATAAGGAAATTTGTAAGCCTATAGGTAACACCATCGACGACACTGAAGAGCCCATCTTACACTCGAGAGGAAACAACGCTATATTGGAAGTTACATAA
- Protein Sequence
- MDTLCRVCIEKVAKCTSLSSRMEDSSNLSFFDFLNKCTTLNARESDSLPQSLCSVCANAMKTFYSFMKLAEKSDLILREALRNLIAEGRYNDRREIPCGEIAITKKIEEGPIDFNQGDSFHCQPSKNSTEKQLCMLDIVKEESRASESTSIVDVKNAGINETEKFHSNLDHPEGNIEGLDDILLCVERHLTSIDAKHYDSEDDVPISLLKSRWAKNEDRADSQSNSLSEAFCIPSNVPSKIGRTEAESKEVVKEYPPSVHGAGGLIDNGISSEQATIRNEKVEGDSFHCQPGQYSSGSSLYILDIVKEEPRLSESTSIVAVKDAEIDKGESNINHPESSIEEPDNVLSRRDGRRLAINYTKPIDSEDDVPIDLLKSRLYKNGDETDNVLSRRDFRRPAINYTKLIDSEDGVPIDLLKSILYKHGDETESQSKVHLEIHKGIRHKCNQCDKEFTHINALRRHINWHANPKPFKCENCGKLLCSKNEYTRHMEICKRRRKPQQLNKCDHCDKEFRSIYNLHKHMRCHKNAKSFKCGSCGKLFRRKDLCIKHNVICKRRSKPQQLKTPELRISETDCGICGKTFSTEDHLVVHMKNHLGITTSFKCENCGEFFVWKCTYTKHLGKCKGPRQPKPKPECEICGKQFSKRYHLGIHKEAHKRIKKKCVECGKQISSLGLKRHMIMHTNRKTEPIECEICGKTYSNKGNLNIHMELHMGVTRKCDQCGKVFTHRISFLRHLKWHKNPRPFKCEYCGKAFFKKLSEKHKQICKPQPIHSEPKKQILLPGKKAACEICGKQFRQKRYLSLHMELHNGIIKKCEQCGKEFKSSHALKRHMKRHTNTESYKCEKCGEFFAWKRSYTRHVDICKGPRQPKTKPKCEICGKQFHRNFYLNLHMEVHKGIRHKCDQCGKEFKSRIYLKRHTKLHTYTESYKCEKCFKFFAWKRSLTKHLDKCKGPRQPNECKICGKGFSTRYYLSLHKETHTGNSIHFLNRDMELHTNAKPFKCENCGKSFASKNTYMDSGHKEICKPIGNTIDDTEEPILHSRGNNAILEVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -