Tnob018129.1
Basic Information
- Insect
- Thereva nobilitata
- Gene Symbol
- -
- Assembly
- GCA_963855945.1
- Location
- OY979694.1:232428619-232432905[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 2.7e-05 0.0065 18.6 5.5 1 23 256 278 256 278 0.98 2 16 0.00033 0.081 15.1 1.2 1 21 284 304 284 305 0.95 3 16 5.7e-07 0.00014 23.9 3.4 2 23 317 338 316 338 0.97 4 16 0.041 9.9 8.6 3.3 1 14 344 357 344 362 0.90 5 16 1.1e-07 2.7e-05 26.1 0.2 3 23 387 407 386 407 0.97 6 16 9.5e-07 0.00023 23.1 1.6 2 23 413 434 413 434 0.98 7 16 0.27 66 6.0 0.7 1 14 440 453 440 457 0.83 8 16 1.1e-05 0.0028 19.8 0.3 2 23 473 494 472 494 0.96 9 16 5.3e-05 0.013 17.7 4.3 2 23 500 521 500 521 0.98 10 16 0.00011 0.026 16.7 0.6 1 21 527 547 527 548 0.95 11 16 1.2e-05 0.0029 19.7 0.6 3 23 580 600 579 600 0.96 12 16 4.4e-06 0.0011 21.1 3.2 1 23 605 627 605 627 0.98 13 16 0.014 3.3 10.1 0.1 1 20 633 652 633 654 0.94 14 16 7.3e-05 0.018 17.2 1.8 1 23 665 687 665 687 0.97 15 16 0.0056 1.4 11.3 1.1 2 23 693 713 692 713 0.97 16 16 0.002 0.49 12.7 0.5 1 16 719 734 719 736 0.90
Sequence Information
- Coding Sequence
- ATGGCTTATGTTGATTTACAGGAAGGGTCTAAAGATTTTAACCAGGGCGGCTCTTTTCATTCTCAACCAAGTAAAAACTCAACGGGAACAAAACTTTATGTGTTGGATCGTGTGAAGAAAGAATCACGCGCAACTGAGAGCACATCAATTGTTGATTTGAAACGTGCCGAAATCATAGAAACCGAAAAATTTGAATCTGATCTAGATCATCCCAAGGGAGACATCGAGGAACTTGATGACATTTTATTCTGTATAGATCGTCATCTTACAAGCATTGATACAAAGCATAACGATTCTGAGGATGACGTACCAGTTAGTTTACTGAGAAGTAGATGGGCTAAAAATGGGGATGGAGCTGATTCTCAAAGTAATTCTTTATCTGAAGCATACTGCATCCCTTCTAACGTGCAAGAAGACTCATTTCATTGTCAGCCAAGGAAAACCTTATCTGAATCATCACCTTATATCCTCGATTTTGTGAAGGAAGAACCACGAGTATTCGAAAGTACATCAATTGTTGCTGTGAAAGATGCTGAAATCGATGAAAGTGAATCTAATTCAGAAAGCAGCATCGAGCAACCTGACGTTTTATCACGTAGAGATCGTCGTCGTCGTCAATCATCAGCCATCAATTATACTGAGCTTACTGATTCTGATGACGAGTCCATTAGTTTATTGAACAAGAGATCGGCTAAAACTGAGGATGATACTTATTCTGAAAgcACTTCTTGCGAAGAAATAACAATAAGAAACGAGACGGTTCGGCACAAATGCAATCAGTGCGACAAGGAATTTAAACATATCAATACTCTACGCAGGCACATAAGGTGGCACGCTAATCCAAAACCGTTCAAGTGTGAAAACTGTGGAAAGCGGCTTTGTCGTAAACAAGGATACGCTCGACATATGGAGATTTGTAAACGTCGAAATAAACCACAGCAATTGACTAAATGCGATTATTGCGACAAGGAATTTCGAAGCAATTATAATCTACACCAGCATATGAGATGGCACAGGAATGCAAAATGGTTTAAATGTGGAAGCTGTGGCAAGTCGTTTCGTCGTAAAGACCGTTGCATTCAGCATAATGACATTTGTAAACGTCGAAGTAAACCACAGGAATTGAAAACATCGGAATTGAAAAAATCGGAAAATGATTGCGGAATATGCGGTAAAACATTTACTAGAAAAGAGAACCTCGTTATTCATATGCAAATTCATATGGGGATTATACCAAAATGCGATATATGCGGCAAGAAATTTGAACACGCAAATAGTCTAATTAAACACATGCAAATGCACAATAATCCAAAACGGTTCAATTGTGAAGTCTGTGGGAAGTCGCTTTCTAGTTACTACTCTAAGCATAGGGAATATTGTAGACGTCCAGGCGATCCTTTGAATATAACAAAAGTTGAATGCGAAATATGcggaaaaaaatattctagGAAAAAAACCCTTGATATTCATATGGAATTACATAAGGGAGTTACAAGAAAATGCGATCAATGCGGCAAGGAATTTAAACACAGATTAAGTTTTACAAGACACATGAAATGGCATTCTAATCCGAGACCGTTTAAGTGTGAATACTGTGGGAAGTCGCTTGCTAGGAAACCCAGCTACGAAAAGCAtaagaaaatttgtaaactgGCAGATAAACAGCAGGAATTGAAGCCTCAACCCATTCATACTGAACcagaaaaacaaatattattaccTGGTATGAAGGCTGCATGCGAAATATGCGGTAAACAATTTCGTAAAAACTCATACCtcaaacttcatttggaaaatCACAAAGGAATTCGACACAAATGCGACCAATGCGGCAAGGATTTTAAAACCCGTATTTCTTTAAAAAGTCACATGGAACGGCACACTAATCCACAATCGTTTAAGTGTGAAAAATGTGGGGAGATCTATGCTTGGAAAAGCTCCTACACTAAGCATGTGGAAATATGTAAAGGTCCACGGCAACCGAAAACTAACCATGAATGCGAAATATGCGGTAAACAATTTAGTAGAAACTTTTATCTCGGTCTTCACAAGGAAACTCacaaaggaaataaaaaaaaatgcgatGAGTGCGGCGAGGAATTCAGCATCCTTTCCTTCAACAAACATATGAAAAGGCACGCTAATGCAAAACTTTTTAAGTGTGAAACCTGTGGAAAGTCGTTTGCTTCGAAAAACGAGTACATGGATAGCGGGCATAAGGAAATTTGTAAGCCTATAGATAATACGATCGACGACACCGTAACAACTGAGGACCCAAACTTGCAGTGGAGTGGAAATAATGATATAGTAGAAGTTACGTAA
- Protein Sequence
- MAYVDLQEGSKDFNQGGSFHSQPSKNSTGTKLYVLDRVKKESRATESTSIVDLKRAEIIETEKFESDLDHPKGDIEELDDILFCIDRHLTSIDTKHNDSEDDVPVSLLRSRWAKNGDGADSQSNSLSEAYCIPSNVQEDSFHCQPRKTLSESSPYILDFVKEEPRVFESTSIVAVKDAEIDESESNSESSIEQPDVLSRRDRRRRQSSAINYTELTDSDDESISLLNKRSAKTEDDTYSESTSCEEITIRNETVRHKCNQCDKEFKHINTLRRHIRWHANPKPFKCENCGKRLCRKQGYARHMEICKRRNKPQQLTKCDYCDKEFRSNYNLHQHMRWHRNAKWFKCGSCGKSFRRKDRCIQHNDICKRRSKPQELKTSELKKSENDCGICGKTFTRKENLVIHMQIHMGIIPKCDICGKKFEHANSLIKHMQMHNNPKRFNCEVCGKSLSSYYSKHREYCRRPGDPLNITKVECEICGKKYSRKKTLDIHMELHKGVTRKCDQCGKEFKHRLSFTRHMKWHSNPRPFKCEYCGKSLARKPSYEKHKKICKLADKQQELKPQPIHTEPEKQILLPGMKAACEICGKQFRKNSYLKLHLENHKGIRHKCDQCGKDFKTRISLKSHMERHTNPQSFKCEKCGEIYAWKSSYTKHVEICKGPRQPKTNHECEICGKQFSRNFYLGLHKETHKGNKKKCDECGEEFSILSFNKHMKRHANAKLFKCETCGKSFASKNEYMDSGHKEICKPIDNTIDDTVTTEDPNLQWSGNNDIVEVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -