Tnob040445.1
Basic Information
- Insect
- Thereva nobilitata
- Gene Symbol
- -
- Assembly
- GCA_963855945.1
- Location
- OY979697.1:17767059-17781633[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1.6e-05 0.0039 19.3 1.9 1 23 181 203 181 203 0.96 2 16 0.00035 0.085 15.1 1.9 1 23 209 231 209 231 0.97 3 16 2e-06 0.00048 22.1 2.6 1 23 237 259 237 259 0.99 4 16 4.5e-05 0.011 17.9 1.5 2 23 266 288 266 288 0.97 5 16 0.0091 2.2 10.6 3.9 1 23 528 551 528 551 0.97 6 16 0.39 95 5.5 1.4 1 19 615 633 615 636 0.94 7 16 7.6e-05 0.018 17.2 9.1 2 23 736 757 735 757 0.98 8 16 0.001 0.25 13.6 6.0 1 23 763 785 763 785 0.96 9 16 0.00026 0.064 15.5 0.6 1 23 791 814 791 814 0.91 10 16 4.5e-07 0.00011 24.2 0.5 2 23 825 846 825 846 0.97 11 16 1e-06 0.00025 23.0 1.2 1 23 851 873 851 873 0.98 12 16 2.9e-06 0.0007 21.6 0.3 1 23 879 901 879 901 0.96 13 16 5.6e-07 0.00014 23.9 0.6 1 23 907 929 907 929 0.98 14 16 1.1e-06 0.00028 22.9 0.7 3 23 937 957 935 957 0.96 15 16 4.8e-07 0.00012 24.1 1.2 1 23 963 985 963 985 0.99 16 16 0.002 0.48 12.7 0.8 1 23 990 1013 990 1013 0.98
Sequence Information
- Coding Sequence
- ATGACTGTTTCAGATGATTTATTATCTATGGTAAAGGAAATAAAACCAAACGTTTATGAAGTACTCACAATTGGTGAAATGTATGAAGAATGTTTCGGGCTGAAGCTTGAAGATAGTCCAGCATTCAAGAAGATATGTATGCAGTGCAAGATACAACTCACCTACTTTCTTGACTTTAAGGTACAAGCATTAAAAACTCATGAAAAATTGCTTAAAATCCAACTGGAAGATGCTTCCTGTGACGATGAAACGCGTAGCAAAGATGAAGATGAAATAGATGATGTTATTATAGTTGAATATCTTGAAGATGAACAAGAATCTGAGATTCCGTATATTGACTCGCATATTATAGAAGAGGCGGGCGAAACTGAGGAGTTAGTTCAGTCAACGGAGGGTGTCGCTGATTTAGAAGATAATCTTCCACAATGTGAAGAGAgtgactttgatgaaacaaaaTTCTTGGAATATTTAGAATCTGAGAATTGGAAAAAgaaaCCACGTAAACGTTCCAGAAAGGTGCATTCGAAAACATATTTTAAGCATATTTGTGAGCTTTGTGGTAAAAAATTTCGTTATGAATCTACATTTACTGCTCATCAGAATGTGCATAATGGACTACCTGCTTATAACTGTTCAATTTGCAATAAGGGATTCAAAGATAAACTTAGCTTTGAGTATCACAAGCGATGGCACGCCGGTGTAAAGCCTTTTCAATGTAAAATTTGTGGTAAGCGATTTGGAGTTAAAAGTCATTTGACATACCATCTAGAAACGCATAATGAAAGCAATCAAAATGAGTGTCCCATATGCCATCAAATGTACAAGACTAGAACAACATTAAAATTACATATGGAAACAATTCATATAAGAATAAAAACTATTATGGAGGATATTTGCCGTATCTGTATGACCGTTTCAGATGAATTAATATCTATGGTAAAAGAAATAAATCCAAACGTTTATGAAGTACTCGCAATTGGCGAAATGTTTGAAGAATGTTTCGGGCTGAAGCTTGAAGATATTCCAACATTCCAGAAAATATGTATGCAGTGCAAGATACAACTCACATACTCTCATGACTTGAAGGTACAAGCATGGAAAACCCATGCAAAATTGCTTAAAATGCCGCTGGAAGATGATCCCGGTATCGTTGAAGCCCGTAACAACGACGAGGATGAAACCGATGATGCAATTATAGTTGAATATCTTGAAGATGAGCAAGAATCTGTTATCCCGCATATTGACTCGCATGTTAGTGTTACAGAAAAGACAGCCGAAACTGAGGAGCTCGTTCAGTCAACGGAGAGTGTCTCTGATTTAGAAGATAATCTTCCACAGCAGTGTGAAGAGAGTGAATTTGATGAAACAAAATTCTTGGAATATTTAGAATCTGAGAAATGGAAAAAGTACTACGAAgaTGACGATCCTCCAAGTTTTTTATGTAACGAATGTCTAGATACTTTAAAGTCTTTCCACATTTTCAAGAAACAGTGTGAAAACTCATACATACAGTTAAAATTGATCGTTGATGAATGTACTGCTGAAATTACGAAAGACACTTCAGAATTGGACGTATTCTTTTATGAATGCGAAGTGTGTAAAGAACAATTCACAAAATTTAACAAGCTTAAGGATCATCATAAAGTGAAACAtcgtaaaaatgatataaaatgcTCAACTTgttctaaaatttatattaaagttGGAGACCAAACAAAAACTCAATTACTAGAGAACCAGTTACCATCAATAAATGATTGCAATGAATGTAAACCGTCAGCTGAAGATCAGCCCGATGATAGATCAAGTAAAAACGCCGATGGTGATAATATACCGTGGCAGTATATGTGCAGCAGCTGTGCTCAGACATTCTCTTCTGAAGTTTCATTTAAGGAGCATTCATGCGATATTTCTTATATaaaaaatgagGTCCCCTTAACCATAGAAGACGCTCAAGCAAATATCGATGCTCCTGAAAACAGCGACGAACACACCTTGGAAACTATTTCTGGTACAGAGTCTGTAGAAGAAGGTGGAGGTGATGAAAGGATCGATGATGATTCTGAAGGCGAAGTGATGGATTGGAAGGCTGAAGACTCGAGCGCTAATTcagATAGTAAAACAAAACCCCAAAAAGCACAAGAAGATACAAAACCTAAAAGAAAATACCGAAGAAGAAATCTCAATGATAATGGAGAACATAATAAATGCCATATATGCAATAAGGTATTTTCCCGTCACACTCATCTAAGGCGTCACTTTTTAACACACTCCGAAGATAAGCCATTCAGTTGTGAAGTATGCAGCAAAGGTTTTACTAGATTGGATCACTTAAATATCCATAGACACCATCATTCGGAAGTTAAGCCATTCAATTGTGATGTTTGTCAGCGTGGCTTTATACGTGCTGAACATCTTAAGAATCATAAAGAAGCTGTCCATGGGAACAGAGCGAATCTATTTAAGACAGAAGTTTGTGAAATATGTAAGAAGGCTTTTACTACATCAAAATACTTGCAAATTCATATGAGAATACATGGTGAACGAACGTTTCCTTGTAAAACATGCccggaaaaatttaaaactaaacCAGAACTAACACAGCATATGAAGACACATGCCAATGAGAAGCCTTACCTTTGTTCAGAATGTGGATTAAGATTTGTTAGAAATGATTATTTAGTTATACATATGAGACGGCATAAAGGAGAGAAGCCTTATAAGTGCAAGTATTGTGGTAAAGGCTTCCCAAGAGCTACCGATTTAACAGTTCATGAAAGATATCACACTGGTGAGAAAACACATTTATGCACAATATGTGGCAAGGGTTTCCAAAGAGCTTACAATTTACTAGTTCATATGAGAGTACACACTGGAGAAAGGCCATATCAATGTCCGCATTGTTCAAAAAGTTTTGCACAAGGCAATGATTTAAAAGCCCACATTCGGCGTCATACTGGTGAACGTTTTAAGTGTGAACTTTGCGGTGATGGTTTTATACAAGGATATCATCTTACACAACACAAAAGAGTCGTTCATGGAATTGATATGAAATCGCACATACGAAGAGTGCAGAAATTCACTACTACTGTCGATCAGGAACAGAAAACGCAAGATGATACTATTCAAGAAAAAACATCAAAAGGCAATGAAACTGGTGATGAAGAAGGACCCACAGCTGAATGTCTTATTCCTGCGGCGACAgatcaaataaaaattgaagCGGATAATATGGAAgttcaaaCTATTAAAATAACACCGGAAATGGCAGAGGTACTAGAAACTGATGAAGCCTTTACAATGGTATCATATGGTATTACAGATTTAGAagggaaaattaaatttgagtcTGCATATGATTAG
- Protein Sequence
- MTVSDDLLSMVKEIKPNVYEVLTIGEMYEECFGLKLEDSPAFKKICMQCKIQLTYFLDFKVQALKTHEKLLKIQLEDASCDDETRSKDEDEIDDVIIVEYLEDEQESEIPYIDSHIIEEAGETEELVQSTEGVADLEDNLPQCEESDFDETKFLEYLESENWKKKPRKRSRKVHSKTYFKHICELCGKKFRYESTFTAHQNVHNGLPAYNCSICNKGFKDKLSFEYHKRWHAGVKPFQCKICGKRFGVKSHLTYHLETHNESNQNECPICHQMYKTRTTLKLHMETIHIRIKTIMEDICRICMTVSDELISMVKEINPNVYEVLAIGEMFEECFGLKLEDIPTFQKICMQCKIQLTYSHDLKVQAWKTHAKLLKMPLEDDPGIVEARNNDEDETDDAIIVEYLEDEQESVIPHIDSHVSVTEKTAETEELVQSTESVSDLEDNLPQQCEESEFDETKFLEYLESEKWKKYYEDDDPPSFLCNECLDTLKSFHIFKKQCENSYIQLKLIVDECTAEITKDTSELDVFFYECEVCKEQFTKFNKLKDHHKVKHRKNDIKCSTCSKIYIKVGDQTKTQLLENQLPSINDCNECKPSAEDQPDDRSSKNADGDNIPWQYMCSSCAQTFSSEVSFKEHSCDISYIKNEVPLTIEDAQANIDAPENSDEHTLETISGTESVEEGGGDERIDDDSEGEVMDWKAEDSSANSDSKTKPQKAQEDTKPKRKYRRRNLNDNGEHNKCHICNKVFSRHTHLRRHFLTHSEDKPFSCEVCSKGFTRLDHLNIHRHHHSEVKPFNCDVCQRGFIRAEHLKNHKEAVHGNRANLFKTEVCEICKKAFTTSKYLQIHMRIHGERTFPCKTCPEKFKTKPELTQHMKTHANEKPYLCSECGLRFVRNDYLVIHMRRHKGEKPYKCKYCGKGFPRATDLTVHERYHTGEKTHLCTICGKGFQRAYNLLVHMRVHTGERPYQCPHCSKSFAQGNDLKAHIRRHTGERFKCELCGDGFIQGYHLTQHKRVVHGIDMKSHIRRVQKFTTTVDQEQKTQDDTIQEKTSKGNETGDEEGPTAECLIPAATDQIKIEADNMEVQTIKITPEMAEVLETDEAFTMVSYGITDLEGKIKFESAYD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -