Tnob018123.1
Basic Information
- Insect
- Thereva nobilitata
- Gene Symbol
- -
- Assembly
- GCA_963855945.1
- Location
- OY979694.1:232366769-232390713[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00035 0.085 15.1 1.7 3 23 316 336 315 336 0.98 2 17 6.7e-05 0.016 17.3 6.1 2 23 342 363 342 363 0.98 3 17 3e-06 0.00074 21.6 0.3 2 23 370 391 370 391 0.98 4 17 9.1e-06 0.0022 20.1 1.4 2 23 397 418 396 418 0.97 5 17 0.0005 0.12 14.6 0.1 1 20 424 443 424 445 0.94 6 17 0.032 7.8 8.9 0.2 2 23 461 482 460 482 0.96 7 17 7.5e-05 0.018 17.2 0.8 2 23 488 509 487 509 0.97 8 17 9e-05 0.022 16.9 4.0 1 22 515 536 515 539 0.91 9 17 3.2e-06 0.00079 21.5 2.6 1 23 550 573 550 573 0.98 10 17 0.004 0.98 11.7 2.4 1 23 578 600 578 600 0.98 11 17 0.00017 0.041 16.1 0.7 1 21 606 626 606 627 0.97 12 17 3.1e-05 0.0075 18.4 0.3 2 23 1200 1221 1200 1221 0.96 13 17 9.3e-06 0.0023 20.0 0.4 2 23 1227 1248 1226 1248 0.97 14 17 0.00098 0.24 13.7 1.6 1 21 1254 1274 1254 1275 0.95 15 17 1.7e-05 0.0041 19.2 0.1 2 23 1291 1312 1291 1312 0.96 16 17 2e-06 0.00049 22.1 3.9 2 23 1318 1339 1318 1339 0.97 17 17 0.00069 0.17 14.1 1.4 1 21 1345 1365 1345 1366 0.95
Sequence Information
- Coding Sequence
- ATGTTCTTCTTAAGTGTAGCTTatGAAGGGTCTGAAGATTTTAACCAGGGCCATTCATTTTATTGTCAGCCAAGTAGAAACTCAACGGGGCAAAAACTTAGTATTCTGGATATTGTGAAGAAAGAGCCAATTGTTGATTTGAAAGATGCTGAAATCAATGAAGGCGGAAAATTTGAATCTAATCAAGAACATCCGAAGGGGAACGTCGAAGAGCTTGATGACATTTTATCATGTACAGATCGTCGTGTAGCGAGCATTGATGCCGGGCATAGTGATGCTGCGGATGAGGCATCCATTAGCttactgaaaaataaattgggTAAAAATGAGGATGTGATCGATACCCATAATGAAATATTATTTGACGCGCGCTGCATTCCTTCTAACGTTAAAaaaaaaacggATAAAAAAGAACCGAAAAGGGCAAGATTAATTAAGCAAGAAATTTTAGATCCTCAAAGTATTGTTGGCTTAAGTGGTTTAATTGATAACGGCAaaatttctTGCGAGGAAATCACAATAAGAAACGAGAAGATTGAGGAAGACTTCAAAGATTTTAACAAGGAAGACTCTTTTCATTGTCAGCCAAATAAAAACTCAACTGGATCATCACTTGTTATTCTGGATATTGTGAAGGAGGAACCACGCTTATCCGAAAGAACATCAATTGTTGGTTTAACAGATGCTGAAATCAATGAAAGCGAAAAATTTGATTGTAATCTTAATCATTCGGAAAGGAGCATCGAGGAACCTGATGACGTTTTATCATGTATAGATGGTCGTCTAGGAAGCCTCGGTACAGAGCATACCGATTCTGAGGATGATTTACCCATTAGTACgagattattattgaaaaaggGATTGGCTAAAAATTGGGATGAAGCTGATTCCCTAAgaAATTCTTTCGAGGAAATAACAATAAGAAACAAGACGATTAGGCATGGATGCGAAATATGCggtaaacaattttgtacaaaactGTATCTCAAAGAACATCAGGAATATCACAAGGGGATTACACCAAAATGCGATCAGTGCGGCAAGGAATTTACACATATACATTCTCTACGCAAGCACTTGAGACGGCACACTAATCCAAACTATGAAAAATGCGAGATATGCGGTAGAATATTTAGTTCAAAATATTACCTCAGTGTTCACATGGAAAGCCACGGCGGAATTACACAAAAATGCAACCAATGCGGCAAGGAATATAATAACAGTCGATCTCTAAGAAATCATATGAATTGGCACGCTAATCCGAAACCGTATGCATGTGAAATCTGTGGAAAGTTCTTTGCTTGGAAGAACAACTTCACTAGGCATATGGACATTTGTAAACGTCCAGGTGAACCAAAGAAATTGAATACAACAAAAGTTGAATGCGAAATATGCGGTCAAAAAATCAGTTCAAAACAATATCTCAATTTTCACATGGAAAGTCACGCGGGGATTACACAAAAATGCGATCAGTGCGGCAAGGAATATAAAAACATCATTTCTCTACGCAATCACATGAAATTACACACTAATCGGAAACTATTTAAGTGTAAAAACTGTGGGAAGTCACTTTCTAGTAAATACAACTACGCTAAGCATATGGACATTTGTAAACATCCAGGAAAACATcaattgaaaaaactaaaatttaaatgcGACATATGCggtaaacaattttgtacagcATATTACCTTAATCTACATATTATGAAAAATCACAAGGGGATTACACACAAATGCGATAAGTGCGGCAAGGAATATCTTACTATAATTATGCTACGCAAGCACATGCAACGGCACGCTAATCCAAACCCGTTTAAGTGTGAAAACTGCGGGAAGTTCTTTGCTTGGAAGTGGAACTACACTAGGCATATGAGACTTTGTAAACCTGCAGGTAACTCATTCGAGGAAACAGTAACAATCGAGAAGCAAAGCTTGCACCCCGAAGGAAACAAAGATATCGCGGGAAAAGAAGAGTCTGAAGATTTTAACCAGGGCGTCTCATTTCTTTGTCAGCCAAGTAGAAACTCAATTGGACCCCGGGATATTGTGAAGGAAGAAGTAGGCACATCAATTGCAGATCTGAAAGATGCTGAAATCaacgaaactgaaaaatttcactttaagCTGGAACATCCGGAAGAGAACATCGAGGAACTTGTTGACATTTTATCATGTACAGATCGTCGTGTAGCGAGCATTGATACCGGGCATATTGATTCTGCGGAAGAGGCACCCATAAGCttactgaaaaataaattgggTAAAAATGAGGATGAGATCGTTACCCAAAATGAAATATTATTTGAAGCAATTAAGCAAGAAACTTTAGATCCTCAAAGTATTGTTGGCTTAAGCGGTTTAATTGATAACAGCAaaatttctTGCGAGGAAATCACAATAAGAAACGAGAAGATTGAGGAAGACTTCAAAGATTTTAACAAGGAAGACTCTTTTCATTGTCAGCCGAATAAAAATTCAACTGGATCATCACTTTATATTCTGGAAATTGTGAAGGAAGAGCCACGCATATCCGAAGGCACATCAGTTGTTGCTGTGAAAGATGCTGAAATCGATGAGAGTGAATCTAATCTTATTTATCCGGAAAGGAGCATCGAGGAACCTGATAACGTTTTATCACGTATCGAACGACGTCGTCTAGCGCTCAATTATACCGAGCCTATTGATTCTGAGGATTATGTACCCTTTGATTTACTGAAAGGTAGACTGCATGACAATGGGGATGAAGCTGATTGTCAAAgaAAATCTTGCGAGGACATAACAATAAGAAACAAAACGATTGGGGAACAGTTTGAAGATTTTAACCAGGGCGTCTCATTTCTTTGTCAGCCAAGTAGAAACTCAATTGGACCACGGGATATTGTGAAGGAAGAAGTAGGCACATCAATTGCAGATCTGAAAGATGCTGAAATCaacgaaactgaaaaatttcactttaagCTGGAACATCCGGAAGAGAACATCGAGGAACTTGATGACATTTTATCATGCACAGATCGTCGTGTAGCGAGCATTGATACCGGGCATAGTGATTCTGCGGATGAGGGATCCATTAGCttactgaaaaataaattggtCAAAAATGAGGATGAGATGGAtacccaaaataaaatattatttgacGCCCGCTGCATTTCTTCTAACGTTAAAGAAGACTTCAAAGATTTTAACAAGGAAGACTCTTTTCATTGTCAGCCGAATAAAAATTCAACTGGATCATCACTTTATATTCTGGAAATTGTGAAGGAAGAGCCACGCATATCCGAAGGCACATCAGTTGTTGCTGTGAAAGATGCTGAAATCGATGAGAGTGAATCTAATCTTATTTATCCGgaaAGGATCATCGAGGAACCTGATGACGTTTTATCACGTAGTGATCGTCATCGCCTAGCGATCAATTATACCGAGCTTATTGATTCTGAGGATGATGTACCCATTAAGTTACTGAAAGGTAGACTGCATGACAATGGGGATGAAGCTGATTCTCAAAGTAATTCAATGAGTTTATTTTACACTTGGCATATGGGCATTTGTAAACGACGAGGTGAACCACAGAAATTGAATAAAACGAGAGGTGAATGCGAAATATGCGGTGAAAAATTTACTAGGAAAGCTACTTTCCTTGTTCATATGGAGAATCATATGGGGATTACACTTAAATGCGATCTGTGCGGCAAGGAATATAAAAACAGCGTTACTCTAAAAATTCACATGAAATGGCACGCTAATCCAAAACAGTTTAAGTGTGAAAAGTGTGGGAAGTGCCTTTCTAGGAAAGACATTTACACTAGGCATATGGAAATTTGTAAAAGTCCTGATAAACGACAGCAATTGATTAAAAAGATACCTGAATGCGGCGTATGCGGTAAAAAATTTAGTACAAAAGGTAGCCTCGATATTCACATGGACATTCATAAGGGGATTATAGCAAAATGCGATCAATGCGGCAAAGAATTTACGCACAAATCTAGTCTACGCAGACACTTGAAATGGCACGAGGATCCAAACCCTTTTGAGTGCGAAAAATGCGGGTTGGTGTTTGGTTACAAAAAGAGCTACACTCACCATATGAGCAAATGCAAACCTGAATCTAATTCGTTCGAGGAAGCAGTAGTAATCGAGAAGCCAAACTTGCACCCAGAAGAAAGCGAAGATATTGATGTAAAAGTAACGTAA
- Protein Sequence
- MFFLSVAYEGSEDFNQGHSFYCQPSRNSTGQKLSILDIVKKEPIVDLKDAEINEGGKFESNQEHPKGNVEELDDILSCTDRRVASIDAGHSDAADEASISLLKNKLGKNEDVIDTHNEILFDARCIPSNVKKKTDKKEPKRARLIKQEILDPQSIVGLSGLIDNGKISCEEITIRNEKIEEDFKDFNKEDSFHCQPNKNSTGSSLVILDIVKEEPRLSERTSIVGLTDAEINESEKFDCNLNHSERSIEEPDDVLSCIDGRLGSLGTEHTDSEDDLPISTRLLLKKGLAKNWDEADSLRNSFEEITIRNKTIRHGCEICGKQFCTKLYLKEHQEYHKGITPKCDQCGKEFTHIHSLRKHLRRHTNPNYEKCEICGRIFSSKYYLSVHMESHGGITQKCNQCGKEYNNSRSLRNHMNWHANPKPYACEICGKFFAWKNNFTRHMDICKRPGEPKKLNTTKVECEICGQKISSKQYLNFHMESHAGITQKCDQCGKEYKNIISLRNHMKLHTNRKLFKCKNCGKSLSSKYNYAKHMDICKHPGKHQLKKLKFKCDICGKQFCTAYYLNLHIMKNHKGITHKCDKCGKEYLTIIMLRKHMQRHANPNPFKCENCGKFFAWKWNYTRHMRLCKPAGNSFEETVTIEKQSLHPEGNKDIAGKEESEDFNQGVSFLCQPSRNSIGPRDIVKEEVGTSIADLKDAEINETEKFHFKLEHPEENIEELVDILSCTDRRVASIDTGHIDSAEEAPISLLKNKLGKNEDEIVTQNEILFEAIKQETLDPQSIVGLSGLIDNSKISCEEITIRNEKIEEDFKDFNKEDSFHCQPNKNSTGSSLYILEIVKEEPRISEGTSVVAVKDAEIDESESNLIYPERSIEEPDNVLSRIERRRLALNYTEPIDSEDYVPFDLLKGRLHDNGDEADCQRKSCEDITIRNKTIGEQFEDFNQGVSFLCQPSRNSIGPRDIVKEEVGTSIADLKDAEINETEKFHFKLEHPEENIEELDDILSCTDRRVASIDTGHSDSADEGSISLLKNKLVKNEDEMDTQNKILFDARCISSNVKEDFKDFNKEDSFHCQPNKNSTGSSLYILEIVKEEPRISEGTSVVAVKDAEIDESESNLIYPERIIEEPDDVLSRSDRHRLAINYTELIDSEDDVPIKLLKGRLHDNGDEADSQSNSMSLFYTWHMGICKRRGEPQKLNKTRGECEICGEKFTRKATFLVHMENHMGITLKCDLCGKEYKNSVTLKIHMKWHANPKQFKCEKCGKCLSRKDIYTRHMEICKSPDKRQQLIKKIPECGVCGKKFSTKGSLDIHMDIHKGIIAKCDQCGKEFTHKSSLRRHLKWHEDPNPFECEKCGLVFGYKKSYTHHMSKCKPESNSFEEAVVIEKPNLHPEESEDIDVKVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -