Tnob018112.2
Basic Information
- Insect
- Thereva nobilitata
- Gene Symbol
- ZFX
- Assembly
- GCA_963855945.1
- Location
- OY979694.1:232203055-232217818[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.21 51 6.3 5.2 1 20 20 39 20 43 0.91 2 20 3.9e-05 0.0094 18.1 0.8 1 23 52 74 52 74 0.97 3 20 7.1e-06 0.0017 20.4 1.4 1 23 80 102 80 103 0.95 4 20 0.00018 0.043 16.0 3.5 1 23 109 131 109 131 0.97 5 20 1.8e-06 0.00043 22.3 2.0 2 23 139 160 139 160 0.97 6 20 6.1e-05 0.015 17.5 3.1 1 23 165 187 165 187 0.99 7 20 7.1e-05 0.017 17.2 3.0 1 23 193 215 193 215 0.97 8 20 0.016 3.9 9.8 0.4 1 23 219 241 219 241 0.97 9 20 2.4e-05 0.0058 18.7 1.2 1 23 407 429 407 429 0.95 10 20 1.4e-06 0.00034 22.6 0.4 1 23 434 456 434 456 0.98 11 20 0.00012 0.029 16.5 1.2 1 21 462 482 462 483 0.95 12 20 0.0036 0.88 11.9 5.6 1 23 499 521 499 521 0.97 13 20 4e-06 0.00096 21.2 1.5 1 23 528 550 528 550 0.97 14 20 1.5e-06 0.00036 22.5 1.3 1 23 555 577 555 577 0.99 15 20 0.006 1.5 11.2 3.6 1 23 583 605 583 605 0.98 16 20 7e-06 0.0017 20.4 1.3 1 23 619 641 619 641 0.98 17 20 1.2e-05 0.003 19.6 0.9 1 23 656 678 656 678 0.97 18 20 1.8e-05 0.0043 19.1 1.9 1 23 683 706 683 706 0.96 19 20 1.6e-06 0.00038 22.5 2.8 1 23 713 736 713 736 0.97 20 20 0.037 9 8.7 1.5 1 20 742 761 742 763 0.91
Sequence Information
- Coding Sequence
- ATGCGATGGGTTCATCGGTATAGAAAAAGGCCTAAAAATCGTAAAGGCGAAGGACGCTATAAATGTAAACATTGCAAAAGTACCTACCACTCAAAAACTGGACTATGGCATCATGAAGGATTAATacataatattaacaaaaagaaaaaaagctttGTTTGTACGATATGCGATAAAAGCTTTTATACACTTCAAAGTTTTCGTGATCATGAGCTAGTTCAtacgaagaagaaaaattatgcCTGTTCATTGTGTTCTAAGGAATTTCCAAGACAATCTTCATTAAGAACTCATGTACGAGCACACCACACTCAAGATGGCAACTATAAATGtgtaatttgcaaaaaagtttttaCAGATCGAGAagaattcagaacacattgcCGCATTCATATCAATGATACAACCACCCCTGAATGCAAAACATGTGGCAAGTCATTTACAAATCGCAAATATCTTAATAAACATGCTAAAATTCACAAAGAAACAGAATATAAATGTACTGAATGCGGTAAAGATTGTAAATATGGCCATGAATTACGTGTACACATGATGGTACATACTGGAGAAAGACCTCACGTTTGTGAAATTTGTGGTAAAAATTTTCGCCTTAAATCAGTTTATAGAAGGCATACACGCAATCATGTGGCAATGTTTGAATGCGAGATATGTAATAAGTTACATGTGAATGAAGAAAGCCTTAAACTGCATATGGAAATTCATAAAGGCGGTAAATATACAGAATTATCAGAGGAAATTAAGATAGAAACAACGCGAGAAGAGCTAGACAACTTTTGTGAAGGAACAGAAGAACCCGTGATATACTATTACAAACCAAAAGACTTAGACGATAATACCTATTTCGAATTAACAGATGAAACCGGCGAGACCAAAAATGAAGATAGTCTAGCTAAGGACTCAGATATACAGCTAATTGGTTCTGAAAAGATCCCTTTAAGTACCTCGAAAAAGAAGCTATATTCTTATAAAGTAGAGGGTGATCCAGTTGAAAGAAAAGACTCTAAAAATGTTCCAGCATTGGACGTACTAACCAACGGTCACCAAAAATCTAAAAATAGAACTCAGTTTGAGAAGCTGCTAATGGCTCATCGTAATAAAAAACTGCCTAAAAATCGTAAAGTTTATGGGCAGAATTTTAAGTTGCATATTGGTGATCATTCTGGTACAACTGATGAGCATAATGATACAGCAAGGAAGTTTGACTGCTCGTTATGTAATAAGGAATATAAGACTAAAGCAAACCTTCGAGAGCATATGGACTTTCATAgaggcattaaatataaatgtaaTCAATGTGGCAAGGAATTTGCTTTTAGGCCGAGTTTACGTAGACATATAGCGGTGCACAGAGACGAAAGACCATTTAAATGTGAAACATGTGAAAAAAGGTTCAAACAGAAATCAACTTATGTAGAACATTTAAACCTTTTTCCtgattccattttttttctaattacagCTGACGATGGCAATTACACATGTGAACGGtgcaaaaaagtttttgaaaatcgagaagaattcagaacacattgcCGCAAACATATCCTTGATAAATCCATGTTTGAATGCAAAGACTGTGGACAGACATTTACAAATATCAAATATCTTAAAAAACATGCTTTACGTCATGTAGAAACAAAATATAAGTGTACCGAATGCGGTAGAGATTGTAAATACGCCGCTGAATTACGTAGACACATGATGGTACATACCGGAGAAAGACCTTTCGAGTGTGAAATTTGTTGTAGAAGATTTCGTCTTAAAACAAGTCTTAATACCCATCTTAAGATCCATATTGATGAGGATACTGGTAAAATAATTATGGCAAGGGAGTTTAAATGCGAGATATGTAATAAGATGTATCGAACCCCACAAACCCTTAATGAGCATAAGAAAATTCATAcaggcattaaatataaatCTGCGCACAGTGGTGAAAAACCATTTGCGTGTGAAGTGTGTGGAAAAAGTTTCTTTGAGAAATCAACGTACAAAACACATTTAAACGTTCACACGAATGTAAGTTTTCCTTGTACACAATGTGATAAAAAATAtagatcaaaaaaaaacttgctgTTGCATATTAACTACCAACACAATGGCAATCGAAATTGGTTTAAATGTAATACTTGCAATAAAAGTTTTCAAAGGCAAACTACTCTGAAAAGACATATTTTAATATCCCACACTGGAAATAAACCGTTTAATTGTAAATCTTGTGATAGAACGTTTAAAACTGAATTAAAGTATTCTCAACATTTAGaatattgtaaatatatatatcgTCCTACTACAAGTACAATAAACACAGAGAACGAAGACCATGCTGATACAGAATTAACGGAGGAAATTAACACAACGCGAGAAGAACGAGACAGCCTTTGTGAAGAAACAGAAGAGCCCGTGTTAAAATATTACAAAGCAAAAAACTATAGAAAGATAATACCGTAA
- Protein Sequence
- MRWVHRYRKRPKNRKGEGRYKCKHCKSTYHSKTGLWHHEGLIHNINKKKKSFVCTICDKSFYTLQSFRDHELVHTKKKNYACSLCSKEFPRQSSLRTHVRAHHTQDGNYKCVICKKVFTDREEFRTHCRIHINDTTTPECKTCGKSFTNRKYLNKHAKIHKETEYKCTECGKDCKYGHELRVHMMVHTGERPHVCEICGKNFRLKSVYRRHTRNHVAMFECEICNKLHVNEESLKLHMEIHKGGKYTELSEEIKIETTREELDNFCEGTEEPVIYYYKPKDLDDNTYFELTDETGETKNEDSLAKDSDIQLIGSEKIPLSTSKKKLYSYKVEGDPVERKDSKNVPALDVLTNGHQKSKNRTQFEKLLMAHRNKKLPKNRKVYGQNFKLHIGDHSGTTDEHNDTARKFDCSLCNKEYKTKANLREHMDFHRGIKYKCNQCGKEFAFRPSLRRHIAVHRDERPFKCETCEKRFKQKSTYVEHLNLFPDSIFFLITADDGNYTCERCKKVFENREEFRTHCRKHILDKSMFECKDCGQTFTNIKYLKKHALRHVETKYKCTECGRDCKYAAELRRHMMVHTGERPFECEICCRRFRLKTSLNTHLKIHIDEDTGKIIMAREFKCEICNKMYRTPQTLNEHKKIHTGIKYKSAHSGEKPFACEVCGKSFFEKSTYKTHLNVHTNVSFPCTQCDKKYRSKKNLLLHINYQHNGNRNWFKCNTCNKSFQRQTTLKRHILISHTGNKPFNCKSCDRTFKTELKYSQHLEYCKYIYRPTTSTINTENEDHADTELTEEINTTREERDSLCEETEEPVLKYYKAKNYRKIIP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -