Basic Information

Gene Symbol
SMARCC2
Assembly
GCA_963855945.1
Location
OY979695.1:192532163-192535881[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 6.4e-14 2e-10 42.3 0.1 3 44 625 666 624 668 0.96

Sequence Information

Coding Sequence
ATGGTAACTGTAGGGCCAAGAAAGGACGGTAGTCCTAACGTTGAATTCTTTCAATCTCCAGAATGTTTGCAAGGATTTGAATCTATTCGCATATGGCTGcagaaaaattgcaaaaagtcGCTTGCGTGCAGCACTGATCCTATTACAAAGGAATCGCTGGCACAATTGCTTATTCAGTTTATGCAGTATCAAGAAAGTAAGCTTGGGAAAAATGTGCCAGAACCCCCCACTACTCGAATACCCATGCGATGTTTCCTTGATTTCAAGCCTGGTGGAGCGTTGTGTATTATATTTGCAAGCATGTATAGATTTAGAGCTGAGCAAAGAGGCCGAAAATTTGACTTTACAATAGGGAAAAACCCATCTAGAAAAGATCCGAATATACAACTTATAATGGAAATTGAACACGCGCTTCTTGACGCAGAATGTTATCGATTACCTTATGTATACATCAGGCCTGAAGTAGACAAGCAGTTGGCagctaaaataaaagaaattttagcGCCACGAAGGGTAGAAATAGTTGCTGATGAAGAGGAGGCCACGCATGTCATCTATCCAATTGTCGATCCACATCCGCATGAAGAATATGCTAGACCTACCTTCAAGCGAGGGCCAAGTGTTATGATTCATTGGTATTATTATCCTGAATCATATGATTCTTGGCTACCAAATACTTTTGACCTCCCTGACAACGTTCCAGACAGTCCACTTTCCCCGTCTGATCGCTGGAGAGTATCGGCGTCATGGGTATTAGATTTAGAACAGTACAATGAATGGATGTCTGAAGAAGATTATGAAGTAGACGACATGGGGAAGAAGAAGTTCCATAAACTTCGTCTTTCATTAGATGATTTGATAGCAATGAGCGATGATAAGAAGAAAGGTgccaataaacaaaaaagaaggCGCTCACCATCCCCACCACTTAAAAGTGGAAAAAGAAAAAGGTCGCCGGCtgtgttttcaaaaaaatctcgTAGTGGTGATGGAGATGATGATGAGGATTTAACACGTGATATGGACGATCCACAGCCAGAAACTAACATAACCGAAGTAAGCAAATCACAAACTGGGCAGTGTACTGCAAGTCCAGCTCCTATAACAAATACTAAACGCGACAATGAGCTGATGCCTATTAAGGGTGGCACTGTAACAGATTTGGATGAAGAAATGGAAAGGACAGGAGAGGATTCTCAAACAGGAAAGACCAGCGACAATAGTAACACTCAAGAATTCCCTCATAAGGAAGACATGGAAGACAATGTAACCGAGCAGACACATCATATTATTGTACCATCATATTCGGCATGGTTTGATTATAATTCTATTCATGTCATTGAAAAGCGTGCTCTGCCCGAGTTTTTCAATGCAAAGAACAAATCTAAAACTCCGGAAATCTATATGGCATATAGAAATTTCATGATTGATACGTACAGGCTCAATCCAACAGAATATCTCACCAGTACAGCTTGCAGAAGGAATTTGGCAGGTGATGTTTGTGCGATTATGCGCGTGCACGCGTTTTTGGAACAATGGggattaataaattatcaaattGATGCCGAGCTACGTCCTACGCCGATGGGACCACCGCCAACTTCTCATTTCCATATACTAAGTGACACCCCATCCGGTTTACAACCATTGAACCCTCAAAAAACACCTCAGCCCTCAGCTGCAAAAGCTTTGTTTGATTTAgataaaaaaccaaaagacaAAGAAGGTGAAATTCCAACCGTTCCACCAGCTTTAACTTCCGTAAAGATTGAAGGCGGTGTGGAAGCCGGCGGACAATTTGGTTTGAAACTAGATCAGTATGCGAAAAAACCAGCAGCTATGAAAAATAAAACCGCAGCTAATATGGTAAGAGAATGGACGGACCAAGAAACTCTACTTTTACTTGAAGGATTGGAAATGTTTAAAGATGATTGGAATAAAGTCTGTGAACACGTTGGTACAAGAACACAGGATGAATGTATATTGCATTTTCTGCGGTTACCTATTGAAGATCCATATTTGGAGGATGATGGCGGTTTCCTTGGGCCATTAGCATATCAGCCTATTCCATTCAGTAAATCTGGAAATCCAATTATGTCCACAGTAGCATTCCTAGCATCAGTTGTTGATCCGCGTGTTGCCGCTGCAGCGGCAAAAGCTGCAATGGAGGAATTCGCCGCAATCAAGgATGAGGTTCCATCGTCAATAATGGACGCACACTTCAAGAATGTTGAAAAATCTGGTTTTGGAGGTAAATTTGATCCTTACGCTGGGTTGGCTAATAGTGGAATTGCGGGAACTGCACCCGAAAAAGATGACGAAGATCCAAATAAGCAGCCGATAGCAGCCTCTCAAGATGAAGAAATGAAAGATTTGTCCAAAAAAGATTCTGaTAAAGATCTTAAAACAATCGAAAACAAGACAAAAGATAAAGATGCAAATACCACTACTTCCTTAACAGAAAAATcaacagaaataaaatcagagaAGCCAGAAGATAAAGATGTAAAAACGGAAGAATCCTCAACAGAAAGCTCTCAATCGACGGCAGGCAGTACCGAAGCAACAAATGGATCTAAGGAAAATGGAGAGAACAATCGAAAACTGTTCAATGAAACTAATCTCCAAACTGCAGCTGCAGCTGCTTTGGCATCTGCTGCCGTAAAAGCGAAACATTTAGCAGCTCTAGAAGAACGCAAAATAAAATCCTTGGTCGCGTTGCTTGTTGAAACGCAAATGAAGAAATTGGAAATAAAACTTCGACACTTTGAAGAATTAGAAACAACAATGGAGAGAGAACGAGAGGGTCTAGAGTATCAAAGACAACAGCTTATAACCGAAAGGCAGCAGTTTCATTTGGAGCAGTTAAAAGCAGCAGAATTCCGTGCAAGACAACAGGCACACCATAGGCTACAACAGGAACAGCAAGGACAGTGGCAAGGAGCTCCAAATCCTCCTCCTGGAGTAGCTCCACCACCAGCCGGTGGTACAACACCTACTAGCCAGCCGGTACCCAGCACACAAGCAGCATCTGTTGTTGGAACTATTGaAACACCTGGAACTACAACGGGTCCATCTAATGAAACACCTGTCCCAACCCAGCCCCAAACTCCAACACAAATTCCAACTCCTCCACAGCCCAACATTCAGTCTGTACCGCCACCAGCTGTACAAACTTAA
Protein Sequence
MVTVGPRKDGSPNVEFFQSPECLQGFESIRIWLQKNCKKSLACSTDPITKESLAQLLIQFMQYQESKLGKNVPEPPTTRIPMRCFLDFKPGGALCIIFASMYRFRAEQRGRKFDFTIGKNPSRKDPNIQLIMEIEHALLDAECYRLPYVYIRPEVDKQLAAKIKEILAPRRVEIVADEEEATHVIYPIVDPHPHEEYARPTFKRGPSVMIHWYYYPESYDSWLPNTFDLPDNVPDSPLSPSDRWRVSASWVLDLEQYNEWMSEEDYEVDDMGKKKFHKLRLSLDDLIAMSDDKKKGANKQKRRRSPSPPLKSGKRKRSPAVFSKKSRSGDGDDDEDLTRDMDDPQPETNITEVSKSQTGQCTASPAPITNTKRDNELMPIKGGTVTDLDEEMERTGEDSQTGKTSDNSNTQEFPHKEDMEDNVTEQTHHIIVPSYSAWFDYNSIHVIEKRALPEFFNAKNKSKTPEIYMAYRNFMIDTYRLNPTEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQIDAELRPTPMGPPPTSHFHILSDTPSGLQPLNPQKTPQPSAAKALFDLDKKPKDKEGEIPTVPPALTSVKIEGGVEAGGQFGLKLDQYAKKPAAMKNKTAANMVREWTDQETLLLLEGLEMFKDDWNKVCEHVGTRTQDECILHFLRLPIEDPYLEDDGGFLGPLAYQPIPFSKSGNPIMSTVAFLASVVDPRVAAAAAKAAMEEFAAIKDEVPSSIMDAHFKNVEKSGFGGKFDPYAGLANSGIAGTAPEKDDEDPNKQPIAASQDEEMKDLSKKDSDKDLKTIENKTKDKDANTTTSLTEKSTEIKSEKPEDKDVKTEESSTESSQSTAGSTEATNGSKENGENNRKLFNETNLQTAAAAALASAAVKAKHLAALEERKIKSLVALLVETQMKKLEIKLRHFEELETTMEREREGLEYQRQQLITERQQFHLEQLKAAEFRARQQAHHRLQQEQQGQWQGAPNPPPGVAPPPAGGTTPTSQPVPSTQAASVVGTIETPGTTTGPSNETPVPTQPQTPTQIPTPPQPNIQSVPPPAVQT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2