Tnob019912.1
Basic Information
- Insect
- Thereva nobilitata
- Gene Symbol
- -
- Assembly
- GCA_963855945.1
- Location
- OY979695.1:39678517-39679458[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.4e-10 2.9e-07 31.8 0.0 1 39 15 53 15 57 0.95 2 2 7.5 4e+03 -0.6 0.0 17 24 157 164 155 165 0.86
Sequence Information
- Coding Sequence
- ATGGTCCGCGATTATAAACGGAAAACAGATCGCGCTAAATGGGACGAGGATGACATGAGAAGAGCAGTTAGTGCTGTTATTACTGAAAGTATGGGATATCTCCGACCCTCAAGCACATACAATGTGCCGAAATCTACATTAGAACGTCGTGTCAGGAAAGCGCGGACTAATGAAGATATAGGTTCCAGTGAAtgtggaaaaaaatgtttaggaCGCTTTAAAACAGTATTTAGTAATGAGCAGGAAAATGAGTTATCACAATATGTCAAATCTATGGAAGCACGACTATTTGGTATAAGTGGTAAAGAACTTCGTGTTTTAGCTTATCAATTGGCCGTaagaaataacattaaaaatccGTTCAACGCGGAAATTGGAATGGCTGGCGAGGATTGGCTCAGTGGTTTTTTGAAGCGGCATCCAGATCTGGCATACAGGCGCCCAGAGCCCACGTCTGCTGCTAGAGCTATGGGTTTTAACAAAGCGGCAATTAATGAGTTCTTTACATTGTTAGAACAGGTTATTGTCAAATATTCACTGACACCCGACAGAATATACAATGTCGACGAAACTGGCATCAGCACAGTACCAAAGAGtcaatcaaaaattttgttgttgaaaGGCCAAAAGCAGGTTGGCTGCCTATCTTCAGCAGAAAGAGGCCAAATAGTAATAGCCGAAATTTGTTTTAATGCGGCAGGTACTTATGTTCCACCAATGCTGatattcgctcgaaaaaggatGAAAAATGAGTTGCTGGATGATGCACCTCCAGGTCCAGGATTTTGGGGAACATGCAGTGATAACGGCTGgataactttaaaaatattttttgattggTTTAAATCGTTTGTAGAATTCACAAGGCCCACGAAAGAGAAACCAATCTTACTACTACTGGATGGGCATGCCTCACATACCAAAAACCTTGAGGTTGATTGA
- Protein Sequence
- MVRDYKRKTDRAKWDEDDMRRAVSAVITESMGYLRPSSTYNVPKSTLERRVRKARTNEDIGSSECGKKCLGRFKTVFSNEQENELSQYVKSMEARLFGISGKELRVLAYQLAVRNNIKNPFNAEIGMAGEDWLSGFLKRHPDLAYRRPEPTSAARAMGFNKAAINEFFTLLEQVIVKYSLTPDRIYNVDETGISTVPKSQSKILLLKGQKQVGCLSSAERGQIVIAEICFNAAGTYVPPMLIFARKRMKNELLDDAPPGPGFWGTCSDNGWITLKIFFDWFKSFVEFTRPTKEKPILLLLDGHASHTKNLEVD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00637435;
- 90% Identity
- -
- 80% Identity
- -