Basic Information

Transcription Factor Domain

TF Family: zf-GATA
Domain: zf-GATA domain
PFAM: PF00320
TF Group: Zinc-Coordinating Group
Description: This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 1.2 2.3e+03 -1.5 0.2 26 30 35 39 34 40 0.90

2 3 5.1e-20 1e-16 60.5 4.7 1 35 60 93 60 94 0.98

3 3 1.2 2.4e+03 -1.5 0.1 5 15 112 122 109 125 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	1.2	2.3e+03	-1.5	0.2	26	30	35	39	34	40	0.90
2	3	5.1e-20	1e-16	60.5	4.7	1	35	60	93	60	94	0.98
3	3	1.2	2.4e+03	-1.5	0.1	5	15	112	122	109	125	0.83

Coding Sequence: ATGCAGCTCACGGTTCGCGTTGCAGCAACCGATGTTGCGAAGGTTGCGCAACCAATTAGCCGGCTGTACGTGCACCAAGATACACGTCGGTGGATCATAGGATGTGGGCTTTACAATCTTGTCATTGAGCACAAAAAAGCAAATGAAATTGTCCGTAGAAAACATAAGGGTCGCGAGTGCGTGAACTGCGGCGCGACGAGCACTCCGCTGTGGCGGCGCGACGGCACCGGCCACTACCTGTGCAACGCGTGCGGCCTCTACTACAAGATGAACGGTCAGAACCGACCGCTCATCAAGCCCAAGCGAAGATTGTTAACATTTAATCTAAGGTCGGGTACGCATAAAACTGAGACAATGCGACATTCGGCGAGCGCGCGTCACGTCACAGCCTCAGCGCGGCCAGCGAGCGCCGAGCCGGCTAACGAGTGGCCCGTGCGCGCAATTCTACCTACTATTTACCTTAATACCCGTCTCGCAGACATAAACTAG
Protein Sequence: MQLTVRVAATDVAKVAQPISRLYVHQDTRRWIIGCGLYNLVIEHKKANEIVRRKHKGRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPKRRLLTFNLRSGTHKTETMRHSASARHVTASARPASAEPANEWPVRAILPTIYLNTRLADIN

Sequence clustering based on sequence similarity using MMseqs2