Basic Information

Insect: Theretra japonica
Gene Symbol: -
Assembly: GCA_033459515.1
Location: CM065946.1:1411620-1421612[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00015 0.0097 16.6 1.3 1 23 310 333 310 333 0.97

2 9 0.0077 0.49 11.2 2.3 2 23 341 362 340 362 0.96

3 9 0.7 45 5.1 3.7 1 19 366 384 366 388 0.90

4 9 0.00037 0.024 15.4 4.2 2 23 394 415 394 415 0.98

5 9 0.0045 0.29 12.0 0.6 3 23 421 442 419 442 0.94

6 9 0.05 3.2 8.7 0.2 2 20 458 476 457 478 0.93

7 9 8.7e-05 0.0056 17.4 2.7 2 23 509 531 508 531 0.97

8 9 4e-05 0.0025 18.4 1.2 1 23 586 608 586 608 0.99

9 9 0.00024 0.015 16.0 0.2 2 23 615 637 614 637 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00015	0.0097	16.6	1.3	1	23	310	333	310	333	0.97
2	9	0.0077	0.49	11.2	2.3	2	23	341	362	340	362	0.96
3	9	0.7	45	5.1	3.7	1	19	366	384	366	388	0.90
4	9	0.00037	0.024	15.4	4.2	2	23	394	415	394	415	0.98
5	9	0.0045	0.29	12.0	0.6	3	23	421	442	419	442	0.94
6	9	0.05	3.2	8.7	0.2	2	20	458	476	457	478	0.93
7	9	8.7e-05	0.0056	17.4	2.7	2	23	509	531	508	531	0.97
8	9	4e-05	0.0025	18.4	1.2	1	23	586	608	586	608	0.99
9	9	0.00024	0.015	16.0	0.2	2	23	615	637	614	637	0.96

Sequence Information

Coding Sequence: ATGTCCGATTTAAAAGTCTGCCGAGTGTGCTTGAGTACGGAcgttaaaatgtacaaatacgATCGATTTcaactgaaatattattatgaagatATTATGGCTGAAAagGTAAAAGAAACTGAAGGTCTCCCTCACTATTTCTGCTATGAATGTGCATCGATGCTCCACAAATTCCACAAGTTCAAAGAGAAATGCCTTAATGGGCAGTATGCATTAAAAGAGATACTTTGGAAAGGTGCTGTTATCACGTGGAAAAGCATAGCAAAAGTGGACAggcaacaaaaaaaacttagatCTTCCatagatattataaatgtaaatgaaagAGTCAAAACATATGAGATTAAACACAGTTCTTCAAATAGCAAAGCAAAAATCATAATAGAAACAGATAATATAGAGCCTGAAGAAGTTAATATTCATAATGATTCTGATATTGAATCAatgaaaaatgataattttgataatgctGTTGACTTTGGTGATGAAAAGGATACTATCGATGACAAAAAGGTGACTATTGACTTGGAAAACATACAAGATGATATCAAAACTGAAATTAAACACACAGATGTGAATGATGCTGAAAAAGATATAAATGAGtcaagaaaaactaatatagaAGAAATAACCATTTTAGTTGATGTAGAAgtatctaatattaaaaaagatttgTCAAAAGATACCAAGGTTAAAGATgaaaaaactgtaataaaacgGAAAGATAGAAGCACTAGAAAGATTAACAGgaaatgtaaaaagaaaaaaggtaaaaatgttattgttgaaGCTGTTAAGTTCCAATCAGCAATTAAAAAGAAGCAAGATTTAGATGGTAGTAATTGGCAGAAGTACAGTTTGCCAGAAGAAGAAGCAGTGAAAGAGTTTAAGGCGAGAGCTCAGGATCCTAAGTATATTAATGCTATATACAAATGCACTGGGTGTTTGAAAGGGTTTTCAAAGGAAGACATGATGAAGAGGCATATTAAATTGAGGCATAGTGAGTCAAACGGATCAGTCGAATGCAGGTTTTGCCACATCAGGTTCAAGTGGAAATCCCTACTTAGCAGACATATACGGGAGCACTACAACAAGTATAAATGTCTGCGATGTGACTTGACATTCTCTAGAGAAACATCAGCGCATCATCACGACCAATTCCATAATGGAGTGACCAGAACCTGTGAATACTGTAATGAGAAATTTACCCACCTGTCCACATACTACACACATTTACGGAAACACAGAAGCAAGCATTTGTGCGCGTTGTGCGGAGAATCTTTCGTCAGTGAATTTGGACTGTACATGCATCGCAGAGTCAAACATATTATGGACAcgGAGAATCAGGACACGGTACCGGCGGAGACGCTGTACTGCGAACGCTGCGACATCAAGTTCGAGACGAATAAGGCTTATGAGGAACATCTCATTCACTCCGCCATGCACTCTGCGTCAGAAGAAACACCCACACTAATGAATTTGAAAGGCGGCACCGTTATAAGAAGAGCTCCGAGGAAGCAAACCCAGTGCACCATATGCAACAAGAACTTCTCAACGCTAGTGGCATATACCAAGCACCATCAGACGGACCACCCCGAGGTGCCGTTGCCGGTGACCACCAGTGGTAAGGCTACCAGCGCGGTGGGAAACAACGTAGTACAGGGACAGGAAAGGCATATCTGTGAAATTTGTGGGGCTTTGTTGGCGCCGAACAGCATCTACAGTCACGTGAACACGCACACGAGGGAGCGACAGTACACCTGCACCACCTGCGGGATGCAGTTCAACGCCAAGGGCACCTTACAACGACATTACCTGACCCACACAGGCGAGAAGCCAGTGGAGTGTGCGTTGTGCGACAAGCGATTCACTCAAGTAGCCAGCATGAGGCTCCACTACAGGACGATACATCTCAAACAACCATACCCGAAAAGAGTTAGAAGAAAGAAAGCAGGGGATCCGGAAGAAACTGCTCTAATAGCAGAATACTATCAGAACAAAGAAACGGCAGAGGAAATGACCATGGAAAGATGGCGCACACTGCGATTGTGA
Protein Sequence: MSDLKVCRVCLSTDVKMYKYDRFQLKYYYEDIMAEKVKETEGLPHYFCYECASMLHKFHKFKEKCLNGQYALKEILWKGAVITWKSIAKVDRQQKKLRSSIDIINVNERVKTYEIKHSSSNSKAKIIIETDNIEPEEVNIHNDSDIESMKNDNFDNAVDFGDEKDTIDDKKVTIDLENIQDDIKTEIKHTDVNDAEKDINESRKTNIEEITILVDVEVSNIKKDLSKDTKVKDEKTVIKRKDRSTRKINRKCKKKKGKNVIVEAVKFQSAIKKKQDLDGSNWQKYSLPEEEAVKEFKARAQDPKYINAIYKCTGCLKGFSKEDMMKRHIKLRHSESNGSVECRFCHIRFKWKSLLSRHIREHYNKYKCLRCDLTFSRETSAHHHDQFHNGVTRTCEYCNEKFTHLSTYYTHLRKHRSKHLCALCGESFVSEFGLYMHRRVKHIMDTENQDTVPAETLYCERCDIKFETNKAYEEHLIHSAMHSASEETPTLMNLKGGTVIRRAPRKQTQCTICNKNFSTLVAYTKHHQTDHPEVPLPVTTSGKATSAVGNNVVQGQERHICEICGALLAPNSIYSHVNTHTRERQYTCTTCGMQFNAKGTLQRHYLTHTGEKPVECALCDKRFTQVASMRLHYRTIHLKQPYPKRVRRKKAGDPEETALIAEYYQNKETAEEMTMERWRTLRL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00820441;
90% Identity: iTF_00820441;
80% Identity: -